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AT2G17780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.915
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PLAC8 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
mid1-complementing activity 2 (MCA2); CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: PLAC8 family protein (TAIR:AT4G35920.2); Has 737 Blast hits to 732 proteins in 87 species: Archae - 0; Bacteria - 17; Metazoa - 44; Fungi - 45; Plants - 605; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Protein Annotations
EMBL:AB196961EMBL:CP002685EnsemblPlants:AT2G17780EnsemblPlants:AT2G17780.1
entrez:816287GeneID:816287GO:GO:0005262GO:GO:0005886
GO:GO:0016021GO:GO:0048528GO:GO:0070588hmmpanther:PTHR31704
hmmpanther:PTHR31704:SF3HOGENOM:HOG000030376InParanoid:Q3EBY6InterPro:IPR006461
KEGG:ath:AT2G17780ncoils:CoilOMA:ADQCEVIPaxDb:Q3EBY6
Pfam:PF04749Pfam:Q3EBY6PhylomeDB:Q3EBY6PRIDE:Q3EBY6
PRO:PR:Q3EBY6ProteinModelPortal:Q3EBY6Proteomes:UP000006548RefSeq:NP_001031366.1
RefSeq:NP_001031367.1RefSeq:NP_001031368.1RefSeq:NP_179369.2STRING:3702.AT2G17780.1
TAIR:AT2G17780tair10-symbols:MCA2TCDB:1.A.87.1.2TIGRfam:TIGR01571
TIGRFAMs:TIGR01571UniGene:At.40099UniProt:Q3EBY6
Coordinates (TAIR10) chr2:-:7725155..7726952
Molecular Weight (calculated) 47417.10 Da
IEP (calculated) 6.87
GRAVY (calculated) -0.37
Length 416 amino acids
Sequence (TAIR10)
(BLAST)
001: MANSWDQLGE IASVAQLTGI DALKLIGMIV NAANTARMHK KNCRQFAHHL KLIRNLLEQI KNSEMNQRSE ILEPLQGLDD ALRRSYILVK SCQEKSYLYL
101: LAMGWNIVNQ FEKAQNEIDL FLKIVPLINM ADNARIRERL EAIERDQREY TLDEEDRKVQ DVILKQESTR EAATSVLKKT LSRSYPNMGF CEALKTEEEK
201: LQLELQRSRA RYDADQCEVI QRLIDVTQTA ATVEPNLEKV LTKKEELTSS KKRDDLYDTD SSSIRADSRS TSYVSSGHEL LSGRSLQHRG NWHADLLDCC
301: SEPCLCLKTL FFPCGTLAKI STVATSRQIS STEVCKNLIV YSLILSCCCY TCCIRKKLRK TLNITGGCID DFLSHLMCCC CALVQELREV EIHRASYGTE
401: KSNKEMSPPT PQFMEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)