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AT5G41050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pollen Ole e 1 allergen and extensin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: Pollen Ole e 1 allergen and extensin family protein (TAIR:AT3G26960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZI9eggNOG:ENOG4111CP0EMBL:AB010072EMBL:AY088180
EMBL:BT043492EMBL:CP002688EnsemblPlants:AT5G41050EnsemblPlants:AT5G41050.1
entrez:834107GeneID:834107Gramene:AT5G41050.1hmmpanther:PTHR31614
hmmpanther:PTHR31614:SF3HOGENOM:HOG000005872KEGG:ath:AT5G41050OMA:TREMITF
Pfam:PF01190PhylomeDB:Q9FLM4Proteomes:UP000006548RefSeq:NP_568588.1
STRING:3702.AT5G41050.1TAIR:AT5G41050UniGene:At.30255UniProt:Q9FLM4
Coordinates (TAIR10) chr5:-:16433478..16434076
Molecular Weight (calculated) 18968.30 Da
IEP (calculated) 9.59
GRAVY (calculated) 0.06
Length 172 amino acids
Sequence (TAIR10)
(BLAST)
001: MKQKLIMLLL LLQLLSLNSL SLKHSSAKPN GKITVMGLVY CDVCSNNSFS NHSYFIPGVE VRIICRFNSA SSRTREMITF SANRTTNELG LYKLDITSLE
101: GVACAAEAKK DSLMASCQAS LIGRSKDSCN VPGFRTTTEQ VVFKSKISNL CVYGFTALNF RPLEKNLHLC GK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)