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AT5G54250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.991
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cyclic nucleotide-gated cation channel 4
Curator
Summary (TAIR10)
member of Cyclic nucleotide gated channel family, downstream component of the signaling pathways leading to HR resistance. mutant plants exhibit gene-for-gene disease resistance against avirulent Pseudomonas syringae despite the near-complete absence of the hypersensitive response (HR). Salicylic acid accumulation in dnd2 mutants is completely PAD4-independent.
Computational
Description (TAIR10)
cyclic nucleotide-gated cation channel 4 (CNGC4); CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: Cyclic nucleotide-regulated ion channel family protein (TAIR:AT5G15410.2); Has 13099 Blast hits to 4876 proteins in 392 species: Archae - 0; Bacteria - 175; Metazoa - 8070; Fungi - 607; Plants - 1352; Viruses - 290; Other Eukaryotes - 2605 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPSEeggNOG:KOG0498EMBL:AB010695EMBL:AY045822
EMBL:AY057691EMBL:AY133734EMBL:CP002688EMBL:Y17912
EnsemblPlants:AT5G54250EnsemblPlants:AT5G54250.1EnsemblPlants:AT5G54250.2entrez:835513
ExpressionAtlas:Q94AS9Gene3D:2.60.120.10GeneID:835513Genevisible:Q94AS9
GO:GO:0005249GO:GO:0005886GO:GO:0008324GO:GO:0009626
GO:GO:0016020GO:GO:0016021GO:GO:0030552GO:GO:0030553
GO:GO:0042391GO:GO:0071805GO:GO:0098655hmmpanther:PTHR10217
hmmpanther:PTHR10217:SF476HOGENOM:HOG000238338InParanoid:Q94AS9InterPro:IPR000595
InterPro:IPR005821InterPro:IPR014710InterPro:IPR018490iPTMnet:Q94AS9
ncoils:CoilOMA:SVCLDINPaxDb:Q94AS9Pfam:PF00520
Pfam:Q94AS9Pfscan:PS50042PhylomeDB:Q94AS9PIR:T52574
PRIDE:Q94AS9PRO:PR:Q94AS9PROSITE:PS50042ProteinModelPortal:Q94AS9
Proteomes:UP000006548Reactome:R-ATH-2485179Reactome:R-ATH-2514859Reactome:R-ATH-5620916
RefSeq:NP_200236.1RefSeq:NP_851188.1SMART:SM00100SMR:B9DFK7
SMR:Q94AS9STRING:3702.AT5G54250.1SUPFAM:SSF51206SUPFAM:SSF81324
TAIR:AT5G54250tair10-symbols:ATCNGC4tair10-symbols:CNGC4tair10-symbols:DND2
tair10-symbols:HLM1TCDB:1.A.1.5.7TMHMM:TMhelixUniGene:At.401
UniProt:B9DFK7UniProt:Q94AS9
Coordinates (TAIR10) chr5:-:22025684..22029971
Molecular Weight (calculated) 80085.80 Da
IEP (calculated) 7.99
GRAVY (calculated) -0.18
Length 694 amino acids
Sequence (TAIR10)
(BLAST)
001: MATEQEFTRA SRFSRDSSSV GYYSEEDNTE EEDEEEEEME EIEEEEEEEE EEDPRIGLTC GGRRNGSSNN NKWMMLGRIL DPRSKWVREW NKVFLLVCAT
101: GLFVDPLFLY TLSVSDTCMC LLVDGWLALT VTALRSMTDL LHLWNIWIQF KIARRWPYPG GDSDGDTNKG GGTRGSTRVA PPYVKKNGFF FDLFVILPLP
201: QVVLWVVIPS LLKRGSVTLV VSVLLVTFLF QYLPKIYHSI RHLRRNATLS GYIFGTVWWG IALNMIAYFV AAHAAGACWY LLGVQRSAKC LKEQCENTIG
301: CDLRMLSCKE PVYYGTTVMV LDRARLAWAQ NHQARSVCLD INTNYTYGAY QWTIQLVSSE SRLEKILFPI FWGLMTLSTF GNLESTTEWS EVVFNIIVLT
401: SGLLLVTMLI GNIKVFLHAT TSKKQAMHLK MRNIEWWMKK RHLPIGFRQR VRNYERQRWA AMRGVDECEM VQNLPEGLRR DIKYHLCLDL VRQVPLFQHM
501: DDLVLENICD RVKSLIFTKG ETIQKEGDAV QRMLFVVRGH LQSSQLLRDG VKSCCMLGPG NFSGDELLSW CLRRPFVERL PPSSSTLVTL ETTEAFGLDA
601: EDVKYVTQHF RYTFVNEKVK RSARYYSPGW RTWAAVAVQL AWRRYKHRLT LTSLSFIRPR RPLSRCASLG EDKLRLYAAI LTSPKPNPDD FDDY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)