AT3G04960.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Domain of unknown function (DUF3444) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF3444) (TAIR:AT4G27980.1); Has 31210 Blast hits to 20329 proteins in 1398 species: Archae - 511; Bacteria - 3238; Metazoa - 14770; Fungi - 2177; Plants - 1702; Viruses - 48; Other Eukaryotes - 8764 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:1374099..1375769 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 65076.60 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.02 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.73 | ||||||||||||||||||||||||
| Length | 556 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVVDSDLEGL DQRKEEMRNI FDDIQDKASL ILQFSLKWEE IDDRFGFLKQ RAMEKEVSVR NQILELEKKE ERLRLVEERE RKIEASFSTL QEKGNESDLI 101: LLMEANVMRL VLQMQFEQVV VAQLNAQENF LGSLHDSMMK KHEELMTELE ARKNEVALIS KTIDAKTCDL DMKVKDFDLK QTTESERMRK ETELMETSLK 201: QLEARENELR LLNETIQGKS MELEKKEVNF QLKHEAAARE TEVKNKFLEL KEKKLEEREQ HLELKQRKKE KPAIRAETRK RSRLEYESPL SAEKGRYAET 301: LIRPGKKQVQ KREAHEIIYI DEDEPFNCPD PDFHDFNNTM SSFAVGQVWA LYDPVDDMPR YYAEIRKVLQ PQLSLRVTWL ESLQTTEEPI PACGRFEHGK 401: SETSSHLMFS HEMYHTIRGQ YVTINPRKGE TWALFGDWTK TWKSHSEQQK TPYSYDFVEV VTEFDSDRGI GVAYLGRVEG FTSVYERAAQ NGLVEIMISC 501: DEMLRFSHRV PSFKMTGDEK EGVPAGSFEL DPAAVPRVYL KDAKVKEEKM EPIVLV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)