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AT4G00870.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G16430.1); Has 3066 Blast hits to 2737 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 39; Plants - 2956; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
BioGrid:13281eggNOG:ENOG410IIYWeggNOG:ENOG410Y9TKEMBL:AF013294
EMBL:AJ519812EMBL:AL161472EMBL:CP002687EnsemblPlants:AT4G00870
EnsemblPlants:AT4G00870.1entrez:827990Gene3D:4.10.280.10GeneID:827990
Genevisible:O23090GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0006355Gramene:AT4G00870.1hmmpanther:PTHR11514
hmmpanther:PTHR11514:SF40HOGENOM:HOG000238207InParanoid:O23090InterPro:IPR011598
InterPro:IPR025610KEGG:ath:AT4G00870ncoils:CoilOMA:NCERTKE
PaxDb:O23090Pfam:O23090Pfam:PF00010Pfam:PF14215
Pfscan:PS50888PhylomeDB:O23090PIR:T01559PRIDE:O23090
PRO:PR:O23090PROSITE:PS50888ProteinModelPortal:O23090Proteomes:UP000006548
RefSeq:NP_567195.1SMART:SM00353SMR:O23090STRING:3702.AT4G00870.1
SUPFAM:SSF47459TAIR:AT4G00870UniGene:At.34506UniProt:O23090
Coordinates (TAIR10) chr4:-:362230..363639
Molecular Weight (calculated) 47735.30 Da
IEP (calculated) 7.73
GRAVY (calculated) -0.57
Length 423 amino acids
Sequence (TAIR10)
(BLAST)
001: MYNLTFSPSL SSSLLSFTQQ TPAAIVSSSP PDLVLQQKLR FVVETSPDRW AYVIFWQKMF DDQSDRSYLV WVDGHFCGNK NNNSQENYTT NSIECELMMD
101: GGDDLELFYA ASFYGEDRSP RKEVSDESLV WLTGPDELRF SNYERAKEAG FHGVHTLVSI PINNGIIELG SSESIIQNRN FINRVKSIFG SGKTTKHTNQ
201: TGSYPKPAVS DHSKSGNQQF GSERKRRRKL ETTRVAAATK EKHHPAVLSH VEAEKQRREK LNHRFYALRA IVPKVSRMDK ASLLSDAVSY IESLKSKIDD
301: LETEIKKMKM TETDKLDNSS SNTSPSSVEY QVNQKPSKSN RGSDLEVQVK IVGEEAIIRV QTENVNHPTS ALMSALMEMD CRVQHANASR LSQVMVQDVV
401: VLVPEGLRSE DRLRTTLVRT LSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)