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AT5G50790.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nodulin MtN3 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nodulin MtN3 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: MtN3/saliva-related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), RAG1-activating protein-1-related (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: Nodulin MtN3 family protein (TAIR:AT5G50800.1); Has 1004 Blast hits to 983 proteins in 128 species: Archae - 0; Bacteria - 22; Metazoa - 208; Fungi - 0; Plants - 622; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).
Protein Annotations
BioGrid:20397eggNOG:ENOG4111M4ReggNOG:KOG1623EMBL:AB023037
EMBL:AY054548EMBL:AY064674EMBL:AY084672EMBL:CP002688
EnsemblPlants:AT5G50790EnsemblPlants:AT5G50790.1entrez:835151GeneID:835151
Genevisible:Q9LUE3GO:GO:0005887GO:GO:0008515GO:GO:0015770
GO:GO:0016021GO:GO:0034219GO:GO:0051119Gramene:AT5G50790.1
hmmpanther:PTHR10791hmmpanther:PTHR10791:SF22HOGENOM:HOG000237944InParanoid:Q9LUE3
InterPro:IPR004316InterPro:IPR018179KEGG:ath:AT5G50790KO:K15382
OMA:AMMLITIPANTHER:PTHR10791:SF22PaxDb:Q9LUE3Pfam:PF03083
Pfam:Q9LUE3PhylomeDB:Q9LUE3PRIDE:Q9LUE3PRO:PR:Q9LUE3
ProteinModelPortal:Q9LUE3Proteomes:UP000006548RefSeq:NP_199892.1STRING:3702.AT5G50790.1
TAIR:AT5G50790tair10-symbols:AtSWEET10tair10-symbols:SWEET10TMHMM:TMhelix
UniGene:At.7905UniProt:Q9LUE3
Coordinates (TAIR10) chr5:-:20656461..20657827
Molecular Weight (calculated) 32765.40 Da
IEP (calculated) 9.64
GRAVY (calculated) 0.72
Length 289 amino acids
Sequence (TAIR10)
(BLAST)
001: MAISQAVLAT VFGILGNIIS FFVCLAPIPT FVRIYKRKSS EGYQSIPYVI SLFSAMLWMY YAMIKKDAMM LITINSFAFV VQIVYISLFF FYAPKKEKTL
101: TVKFVLFVDV LGFGAIFVLT YFIIHANKRV QVLGYICMVF ALSVFVAPLG IIRKVIKTKS AEFMPFGLSF FLTLSAVMWF FYGLLLKDMN IALPNVLGFI
201: FGVLQMILFL IYKKPGTKVL EPPGIKLQDI SEHVVDVVRL STMVCNSQMR TLVPQDSADM EATIDIDEKI KGDIEKNKDE KEVFLISKN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)