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AT3G06160.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AP2/B3-like transcriptional factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT3G06220.1); Has 400 Blast hits to 363 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 378; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
Protein Annotations
EMBL:AC018907EMBL:CP002686EnsemblPlants:AT3G06160EnsemblPlants:AT3G06160.1
entrez:819790ExpressionAtlas:Q9M8K2Gene3D:2.40.330.10GeneID:819790
Genevisible:Q9M8K2GO:GO:0003677GO:GO:0005634GO:GO:0006351
GO:GO:0006355hmmpanther:PTHR31920hmmpanther:PTHR31920:SF15HOGENOM:HOG000097078
InParanoid:Q9M8K2InterPro:IPR003340InterPro:IPR015300Pfam:PF02362
Pfam:Q9M8K2Pfscan:PS50863PhylomeDB:Q9M8K2PRIDE:Q9M8K2
PRO:PR:Q9M8K2PROSITE:PS50863ProteinModelPortal:Q9M8K2Proteomes:UP000006548
RefSeq:NP_187267.1SMART:SM01019SMR:Q9M8K2SUPFAM:SSF101936
TAIR:AT3G06160UniGene:At.53200UniProt:Q9M8K2
Coordinates (TAIR10) chr3:+:1864326..1867192
Molecular Weight (calculated) 37424.80 Da
IEP (calculated) 5.61
GRAVY (calculated) -0.45
Length 330 amino acids
Sequence (TAIR10)
(BLAST)
001: MWATKSRRCA VHTSSMASGD VLPRFFTVFL SHCSSESMVI PRSYYNLLPR PLPKTAILIG TGGRFWKVAM TSKQEQVYFE QGWGNFVADN QLKEGEFLTF
101: VFDGHKSYEV SIYGRGDCKE TRAVIQVEEI SDDTEDDNVS LHSPSNVSLD SLSNDSHHST SNVSLRSLSN DSLHGDAEIE SDSEYSPENL PSASISVESV
201: EVVNPTTSRQ RSYKRKTIEN PHLYLDDPNN VCFETCLKLR KFELLVHAQL VKDYGLIFSD NVDYIDGYGK LTAKTTKWAD QRVCINKWQK ICERNQFTEN
301: DSILCEILRN EDKVVYAIKI HIFRDAAAST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)