AT1G60880.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : AGAMOUS-like-56 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Root Specific | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
AGAMOUS-like-56 (AGL56); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: N-terminal protein myristoylation, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: female gametophyte; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 55 (TAIR:AT1G60920.1); Has 1083 Blast hits to 1083 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 1079; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:22411575..22412180 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 22660.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.34 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.61 | ||||||||||||||||||||||||||||||||||||||||
| Length | 201 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGGKKTKIEI KKIINKPAKT VAFTKRREGL FRKASQLCLL SPATQIAILA APMTSKSHAS FYSFGHSSVD NVVSSLLYDH PPLTANQDNR SGLGFWWEDK 101: RFDVSENVEE LKEAVDAVSR MLNNVRCRLN DAVKSTQRDG GLEILHHQEE EVLQTRNDET KTNQTHEFEG GETSGSASWL ENEDDILHFD DDFYTGIDPL 201: F |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)