suba logo
AT3G02990.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : heat shock transcription factor A1E
Curator
Summary (TAIR10)
member of Heat Stress Transcription Factor (Hsf) family
Computational
Description (TAIR10)
heat shock transcription factor A1E (HSFA1E); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: heat shock factor 3 (TAIR:AT5G16820.2); Has 2512 Blast hits to 2481 proteins in 244 species: Archae - 0; Bacteria - 10; Metazoa - 450; Fungi - 485; Plants - 859; Viruses - 0; Other Eukaryotes - 708 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5169eggNOG:KOG0627EMBL:AC018363EMBL:AJ251865
EMBL:BT026365EMBL:CP002686EnsemblPlants:AT3G02990EnsemblPlants:AT3G02990.1
entrez:821162Gene3D:1.10.10.10GeneID:821162Genevisible:Q9SCW5
GO:GO:0003700GO:GO:0005634GO:GO:0005737GO:GO:0006351
GO:GO:0043565Gramene:AT3G02990.1hmmpanther:PTHR10015hmmpanther:PTHR10015:SF199
HOGENOM:HOG000237979InParanoid:Q9SCW5InterPro:IPR000232InterPro:IPR011991
InterPro:IPR027725iPTMnet:Q9SCW5KEGG:ath:AT3G02990KO:K09419
ncoils:CoilOMA:WNVPEFAPANTHER:PTHR10015PaxDb:Q9SCW5
Pfam:PF00447Pfam:Q9SCW5PhylomeDB:Q9SCW5PRIDE:Q9SCW5
PRINTS:PR00056PRO:PR:Q9SCW5PROSITE:PS00434ProteinModelPortal:Q9SCW5
Proteomes:UP000006548Reactome:R-ATH-3371453Reactome:R-ATH-3371511Reactome:R-ATH-3371568
Reactome:R-ATH-3371571RefSeq:NP_186949.1scanprosite:PS00434SMART:SM00415
SMR:Q9SCW5STRING:3702.AT3G02990.1SUPFAM:SSF46785TAIR:AT3G02990
tair10-symbols:ATHSFA1Etair10-symbols:HSFA1EUniGene:At.5971UniProt:Q9SCW5
Coordinates (TAIR10) chr3:+:673614..675988
Molecular Weight (calculated) 51965.80 Da
IEP (calculated) 4.56
GRAVY (calculated) -0.52
Length 468 amino acids
Sequence (TAIR10)
(BLAST)
001: MGTVCESVAT AKSSTAVMSS IPPFLSKTYD MVDDPLTDDV VSWSSGNNSF VVWNVPEFAK QFLPKYFKHN NFSSFVRQLN TYGFRKVDPD RWEFANEGFL
101: RGQKQILKSI VRRKPAQVQP PQQPQVQHSS VGACVEVGKF GLEEEVERLQ RDKNVLMQEL VRLRQQQQVT EHHLQNVGQK VHVMEQRQQQ MMSFLAKAVQ
201: SPGFLNQFSQ QSNEANQHIS ESNKKRRLPV EDQMNSGSHG VNGLSRQIVR YQSSMNDATN TMLQQIQQMS NAPSHESLSS NNGSFLLGDV PNSNISDNGS
301: SSNGSPEVTL ADVSSIPAGF YPAMKYHEPC ETNQVMETNL PFSQGDLLPP TQGAAASGSS SSDLVGCETD NGECLDPIMA VLDGALELEA DTLNELLPEV
401: QDSFWEQFIG ESPVIGETDE LISGSVENEL ILEQLELQST LSNVWSKNQQ MNHLTEQMGL LTSDALRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)