AT3G02990.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : heat shock transcription factor A1E | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
member of Heat Stress Transcription Factor (Hsf) family | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
heat shock transcription factor A1E (HSFA1E); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: heat shock factor 3 (TAIR:AT5G16820.2); Has 2512 Blast hits to 2481 proteins in 244 species: Archae - 0; Bacteria - 10; Metazoa - 450; Fungi - 485; Plants - 859; Viruses - 0; Other Eukaryotes - 708 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:+:673614..675988 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 51965.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.56 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 468 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MGTVCESVAT AKSSTAVMSS IPPFLSKTYD MVDDPLTDDV VSWSSGNNSF VVWNVPEFAK QFLPKYFKHN NFSSFVRQLN TYGFRKVDPD RWEFANEGFL 101: RGQKQILKSI VRRKPAQVQP PQQPQVQHSS VGACVEVGKF GLEEEVERLQ RDKNVLMQEL VRLRQQQQVT EHHLQNVGQK VHVMEQRQQQ MMSFLAKAVQ 201: SPGFLNQFSQ QSNEANQHIS ESNKKRRLPV EDQMNSGSHG VNGLSRQIVR YQSSMNDATN TMLQQIQQMS NAPSHESLSS NNGSFLLGDV PNSNISDNGS 301: SSNGSPEVTL ADVSSIPAGF YPAMKYHEPC ETNQVMETNL PFSQGDLLPP TQGAAASGSS SSDLVGCETD NGECLDPIMA VLDGALELEA DTLNELLPEV 401: QDSFWEQFIG ESPVIGETDE LISGSVENEL ILEQLELQST LSNVWSKNQQ MNHLTEQMGL LTSDALRK |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)