AT1G29820.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.999 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Magnesium transporter CorA-like family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Magnesium transporter CorA-like family protein; FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: transmembrane transport, metal ion transport; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mg2+ transporter protein, CorA-like (InterPro:IPR002523); BEST Arabidopsis thaliana protein match is: Magnesium transporter CorA-like family protein (TAIR:AT1G29830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:10438219..10440625 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61057.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.27 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||
| Length | 540 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGENGENHSV SQESKSKKLE SKNHSGVPKS DLWTDGIICA FEFIRGPKKH VDSKQLEKGA LKQEDGPISH SFPGHNPFVD SSPVDDLRSR SVSSLDFKEA 101: HLLPSGHVER YEGSHWVPIG WARITELVQM VQVNAEWPNL ELIDDEEDVP VTDLAAPYWE RPGGPTWWCH LSAGNSFVEG WLRSATWLHP AISLALRDES 201: KLISERMRHL LYEVPVRVAG GLLFELLGQS VGDPVISEDD VPVVFRSWQA KNFLVSVMHI KGNVTNTNVL GITEVEELLY AGGYNVPRTV HEVIAHLACR 301: LSRWDDRLFR KSIFGAADEI ELKFMNRRNY EDLNLFSIIL NQEIRKLSRQ VIRVKWSLHA REEIIFELLQ HLRGNIARHL LDGLRKNTRE MLEEQEAVRG 401: RLFTIQDVMQ SSVRAWLQDK SLRVSHNLAV FGGCGLVLTI IVGLFGINVD GIPGAQNTPY AFGLFTFLMV LLGAILIVVG LVYLGLKKPI TEEQVEVRKL 501: ELQDVVKIFQ HEAETHAQLR RNNLSPTAGD VFDADYILIQ |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)