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AT2G32400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.859
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21533090 (2011): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : glutamate receptor 5
Curator
Summary (TAIR10)
Glr5
Computational
Description (TAIR10)
glutamate receptor 5 (GLR5); FUNCTIONS IN: protein binding, intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), GPCR, family 3, gamma-aminobutyric acid receptor, type B (InterPro:IPR002455), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 3.4 (TAIR:AT1G05200.2); Has 6965 Blast hits to 6802 proteins in 627 species: Archae - 64; Bacteria - 977; Metazoa - 4763; Fungi - 0; Plants - 634; Viruses - 0; Other Eukaryotes - 527 (source: NCBI BLink).
Protein Annotations
BioGrid:3148eggNOG:ENOG410ISR7eggNOG:ENOG410Y9VHEMBL:AC005700
EMBL:AF210701EMBL:CP002685EnsemblPlants:AT2G32400EnsemblPlants:AT2G32400.1
entrez:817801GeneID:817801Genevisible:Q9SDQ4GO:GO:0004970
GO:GO:0005262GO:GO:0005622GO:GO:0005886GO:GO:0006816
GO:GO:0008066GO:GO:0009506GO:GO:0016021GO:GO:0019722
GO:GO:0070588GO:GO:0071230Gramene:AT2G32400.1hmmpanther:PTHR18966
hmmpanther:PTHR18966:SF241HOGENOM:HOG000239558InParanoid:Q9SDQ4IntAct:Q9SDQ4
InterPro:IPR001320InterPro:IPR001638InterPro:IPR001828InterPro:IPR017103
InterPro:IPR028082KEGG:ath:AT2G32400KO:K05387OMA:NSSHRIQ
PaxDb:Q9SDQ4Pfam:PF00060Pfam:PF00497Pfam:PF01094
Pfam:Q9SDQ4PhylomeDB:Q9SDQ4PIR:F84732PIR:T51136
PIRSF:PIRSF037090PRIDE:Q9SDQ4PRO:PR:Q9SDQ4ProteinModelPortal:Q9SDQ4
Proteomes:UP000006548RefSeq:NP_565744.1SMART:SM00079SMR:Q9SDQ4
STRING:3702.AT2G32400.1SUPFAM:SSF53822SUPFAM:SSF53850TAIR:AT2G32400
tair10-symbols:ATGLR3.7tair10-symbols:GLR3.7tair10-symbols:GLR5TMHMM:TMhelix
UniGene:At.13201UniProt:Q9SDQ4
Coordinates (TAIR10) chr2:-:13752665..13756233
Molecular Weight (calculated) 103519.00 Da
IEP (calculated) 7.88
GRAVY (calculated) 0.02
Length 921 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLGIDPSVA ITALIVVILV VPMDCQRPQL VNIGAVFAFD SVIGRAAKVA LEAAVSDVNN DKSFLKETEL RLLMEDSACN VFRGSFGAFE LLEKEVVAMI
101: GPISSSVAHT ISDIAKGLHF PLVSFAATDP TLSALQFPFF LRTTPNDAHQ MSALVDLINF YGWKEVISVY SDDELGRNGV SALDDELYKK RSRISYKVPL
201: SVHSDEKFLT NALNKSKSIG PRVYILHFGP DPLLRIFDIA QKLQMMTHEY VWLATDWLSV TLDSLSDKGT LKRLEGVVGL RQHIPESVKM EHFTHKLQSN
301: RSMNAYALHA YDTVWMIAHG IEELLNEGIN ITFSYSEKLL HARGTKLHLE KIKFFNSGEL LLEKLLKVNF TGIAGQVQFG SGRNVIGCDY EIINVNKTDV
401: HTVGFWSKNG GFSVVAPKTR HSQKKTSFVS DEKLGDITWP GGGREKPRGW VIADSADPLK IVVPRRVSFV EFVTEEKNSS HRIQGFCIDV FIEALKFVPY
501: SVPYIFEPFG NGHSSPNYNH LIQMVTDGVY DAAVGDIAIV PSRSKLVDFS QPYASTGLVV VIPANDDNAT WIFLRPFTSR LWCVVLVSFL VIAVVIWILE
601: HRINEDFRGP PRRQLSTMLL FSFSTLFKRN QEDTISNLAR LVMIVWLFLL MVLTASYTAN LTSILTVQQL PSAITGIDSL RASEVPIGYQ AGTFTLEYLT
701: YSLGMARSRL VPLDSTEEYE KALKLGPTNW GGVAAIVDEL PYIELFLAER TGFKIVGEPF MHRGWGFAFK RDSPLAIDMS TAILKLSETR KLQEIRKKWL
801: CKTNCAGKSN WNPEPNQLHL KSFKGLYLVC IAITVSAFLV FVLRMIRQFV RYRRMERTSS MPRASWSASP TLRLRELVFD FVEFVDEKEE AIKRMFRRSD
901: DSNNNPSHVG EVQADTEVPR N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)