suba logo
AT4G24350.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Phosphorylase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Phosphorylase superfamily protein; FUNCTIONS IN: catalytic activity, nutrient reservoir activity; INVOLVED IN: response to wounding; LOCATED IN: plant-type cell wall; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside phosphorylase (InterPro:IPR000845), Nucleoside phosphorylase, family 1 (InterPro:IPR018017); BEST Arabidopsis thaliana protein match is: Phosphorylase superfamily protein (TAIR:AT4G24340.1); Has 2694 Blast hits to 2660 proteins in 1094 species: Archae - 2; Bacteria - 2523; Metazoa - 1; Fungi - 2; Plants - 125; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0775eggNOG:ENOG410IHJXEMBL:AF370278EMBL:AY142536
EMBL:CP002687EnsemblPlants:AT4G24350EnsemblPlants:AT4G24350.1entrez:828538
ExpressionAtlas:Q94K59Gene3D:3.40.50.1580GeneID:828538GO:GO:0003824
GO:GO:0009116GO:GO:0009505GO:GO:0009611Gramene:AT4G24350.1
hmmpanther:PTHR21234hmmpanther:PTHR21234:SF21InterPro:IPR000845InterPro:IPR018017
OMA:YVRCGVGPANTHER:PTHR21234Pfam:PF01048PhylomeDB:Q94K59
Proteomes:UP000006548RefSeq:NP_194166.2SMR:Q94K59STRING:3702.AT4G24350.1
SUPFAM:SSF53167TAIR:AT4G24350TMHMM:TMhelixUniGene:At.48901
UniGene:At.71150UniProt:Q94K59
Coordinates (TAIR10) chr4:+:12609637..12611328
Molecular Weight (calculated) 36698.20 Da
IEP (calculated) 8.30
GRAVY (calculated) 0.01
Length 336 amino acids
Sequence (TAIR10)
(BLAST)
001: MDHTLSLLPF LFIIIISSFH VLPVSPTPSH KLKSATTIRK LNRGGPYIGL VTVIATEENA FLRSVDFRPD PTHPFLDLSG RRFRIGKIHG KKVVYVRCGR
101: GMVNGAAATQ QMIDVFNVKG IVHFGIAGNM NNSMSIGDVS IPKQITNAGL WDWLNPDKVK GVEDIAYLDV GNYNVPKGDG DNELGSIGYN YEQLYSVTGH
201: INAPQNVFWI NTTQEWLHLA ADLEKMELSQ CVNASLCLPK KPKLVVGLKA ATAYIFVDNA AYRNFLYDTF GVSSSDMESS AVAMTCASNG YPIIVIRGLS
301: DLAGEGGDNT VHKFGSLAAT NTAKAVLEFI RKLPPY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)