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AT3G23550.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.788
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : MATE efflux family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT3G23560.1); Has 11241 Blast hits to 11165 proteins in 2062 species: Archae - 263; Bacteria - 7905; Metazoa - 148; Fungi - 330; Plants - 1322; Viruses - 0; Other Eukaryotes - 1273 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0534eggNOG:KOG1347EMBL:AB023036EMBL:AY070032
EMBL:AY096384EMBL:CP002686EnsemblPlants:AT3G23550EnsemblPlants:AT3G23550.1
entrez:821934GeneID:821934Genevisible:Q9LUH3GO:GO:0002229
GO:GO:0015238GO:GO:0015297GO:GO:0016021GO:GO:0098542
Gramene:AT3G23550.1hmmpanther:PTHR11206hmmpanther:PTHR11206:SF78HOGENOM:HOG000177026
InParanoid:Q9LUH3InterPro:IPR002528KEGG:ath:AT3G23550KO:K03327
OMA:STEAFRHPaxDb:Q9LUH3Pfam:PF01554Pfam:Q9LUH3
PhylomeDB:Q9LUH3PRIDE:Q9LUH3PRO:PR:Q9LUH3ProteinModelPortal:Q9LUH3
Proteomes:UP000006548RefSeq:NP_188997.1STRING:3702.AT3G23550.1TAIR:AT3G23550
TIGRfam:TIGR00797TIGRFAMs:TIGR00797TMHMM:TMhelixUniGene:At.28427
UniProt:Q9LUH3
Coordinates (TAIR10) chr3:-:8448435..8450649
Molecular Weight (calculated) 50795.00 Da
IEP (calculated) 8.24
GRAVY (calculated) 0.74
Length 469 amino acids
Sequence (TAIR10)
(BLAST)
001: MADPTSKDDH DGEGGRDKSS TFVQKLIDVE EAKTQIIYSL PMIFTNLFYY CIPLTSVMFA SQLGQLELAG ATLANSWATV TGFAFMTGLS GALETLCGQG
101: FGAKSYRMLG IHLQSSCIVS LVFTILITIL WFFTESVFLL LRQDPSISKQ AALYMKYLAP GLLAYGFLQN ILRFCQTQCI VTPLVLFSFL PLVINIGTTY
201: ALVHLAGLGF IGAPIATSIS LWIAFVSLGF YVICSDKFKE TWTGFSMESF HHVVLNLTLS IPSAAMVCLE YWAFEILVFL AGLMRNPEIT TSLVAICVNT
301: ESISYMLTCG LSAATSTRVS NELGAGNVKG AKKATSVSVK LSLVLALGVV IAILVGHDAW VGLFSNSHVI KEGFASLRFF LAASITLDSI QGVLSGVARG
401: CGWQRLATVI NLGTFYLIGM PISVLCGFKL KLHAKGLWIG LICGMFCQSA SLLLMTIFRK WTKLTAATV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)