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AT3G16530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:24393051 (2015): extracellular region apoplast
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22363647 (2012): extracellular region apoplast
  • PMID:19334764 (2009): plasma membrane
  • PMID:16356755 (2006): extracellular region
  • PMID:15593128 (2005): extracellular region
  • PMID:14617066 (2003): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Legume lectin family protein
Curator
Summary (TAIR10)
Lectin like protein whose expression is induced upon treatment with chitin oligomers.
Computational
Description (TAIR10)
Legume lectin family protein; FUNCTIONS IN: carbohydrate binding, binding; INVOLVED IN: response to chitin; LOCATED IN: apoplast, cell wall, nucleus, plant-type cell wall; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Lectin (InterPro:IPR016363); BEST Arabidopsis thaliana protein match is: Legume lectin family protein (TAIR:AT3G15356.1); Has 2027 Blast hits to 2006 proteins in 125 species: Archae - 0; Bacteria - 24; Metazoa - 0; Fungi - 0; Plants - 1986; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1991-MONOMERBioGrid:6235eggNOG:ENOG410JS5EeggNOG:ENOG411192G
EMBL:AF428361EMBL:AP000373EMBL:AY054194EMBL:AY066032
EMBL:CP002686EnsemblPlants:AT3G16530EnsemblPlants:AT3G16530.1entrez:820901
Gene3D:2.60.120.200GeneID:820901Genevisible:Q9LK72GO:GO:0002239
GO:GO:0005618GO:GO:0005634GO:GO:0009505GO:GO:0010200
GO:GO:0030246GO:GO:0048046GO:GO:0050832Gramene:AT3G16530.1
hmmpanther:PTHR32401hmmpanther:PTHR32401:SF2HOGENOM:HOG000153030InParanoid:Q9LK72
InterPro:IPR001220InterPro:IPR013320InterPro:IPR016363KEGG:ath:AT3G16530
OMA:ASHAAQNPaxDb:Q9LK72Pfam:PF00139Pfam:Q9LK72
PhylomeDB:Q9LK72PIRSF:PIRSF002690PRIDE:Q9LK72PRO:PR:Q9LK72
ProteinModelPortal:Q9LK72Proteomes:UP000006548RefSeq:NP_188274.1SMR:Q9LK72
STRING:3702.AT3G16530.1SUPFAM:SSF49899TAIR:AT3G16530UniGene:At.6162
UniProt:Q9LK72
Coordinates (TAIR10) chr3:-:5624586..5625416
Molecular Weight (calculated) 30510.90 Da
IEP (calculated) 7.72
GRAVY (calculated) -0.29
Length 276 amino acids
Sequence (TAIR10)
(BLAST)
001: MQIHKLCFLV LFLANAAFAV KFNFDSFDGS NLLFLGDAEL GPSSDGVSRS GALSMTRDEN PFSHGQGLYI NQIPFKPSNT SSPFSFETSF TFSITPRTKP
101: NSGQGFAFII TPEADNSGAS DGGYLGILNK TNDGKPENHI LAIEFDTFQN KEFLDISGNH VGVNINSMTS LVAEKAGYWV QTRVGKRKVW SFKDVNLSSG
201: ERFKAWVEFR NKDSTITVTL APENVKKPKR ALIEAPRVLN EVLLQNMYAG FAGSMGRAVE RHDIWSWSFE NAAKNN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)