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AT1G06160.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : octadecanoid-responsive Arabidopsis AP2/ERF 59
Curator
Summary (TAIR10)
encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.
Computational
Description (TAIR10)
octadecanoid-responsive Arabidopsis AP2/ERF 59 (ORA59); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene-responsive element binding factor 15 (TAIR:AT2G31230.1); Has 6527 Blast hits to 6261 proteins in 388 species: Archae - 0; Bacteria - 36; Metazoa - 435; Fungi - 42; Plants - 5810; Viruses - 4; Other Eukaryotes - 200 (source: NCBI BLink).
Protein Annotations
BioGrid:22367eggNOG:ENOG410JEA4eggNOG:ENOG41114BYEMBL:AC025290
EMBL:AK228085EMBL:BT011001EMBL:BT014958EMBL:CP002684
EnsemblPlants:AT1G06160EnsemblPlants:AT1G06160.1entrez:837125Gene3D:3.30.730.10
GeneID:837125Genevisible:Q9LND1GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0009723GO:GO:0009753
GO:GO:0009861GO:GO:0009873Gramene:AT1G06160.1hmmpanther:PTHR31190
hmmpanther:PTHR31190:SF3HOGENOM:HOG000237624InParanoid:Q9LND1InterPro:IPR001471
InterPro:IPR016177KEGG:ath:AT1G06160OMA:FAFESSIPaxDb:Q9LND1
Pfam:PF00847Pfam:Q9LND1Pfscan:PS51032PhylomeDB:Q9LND1
PIR:B86197PRIDE:Q9LND1PRINTS:PR00367PRO:PR:Q9LND1
PROSITE:PS51032ProteinModelPortal:Q9LND1Proteomes:UP000006548RefSeq:NP_172106.1
SMART:SM00380SMR:Q9LND1STRING:3702.AT1G06160.1SUPFAM:SSF54171
TAIR:AT1G06160tair10-symbols:ORA59UniGene:At.42354UniProt:Q9LND1
Coordinates (TAIR10) chr1:+:1883046..1883780
Molecular Weight (calculated) 27091.10 Da
IEP (calculated) 4.83
GRAVY (calculated) -0.59
Length 244 amino acids
Sequence (TAIR10)
(BLAST)
001: MEYQTNFLSG EFSPENSSSS SWSSQESFLW EESFLHQSFD QSFLLSSPTD NYCDDFFAFE SSIIKEEGKE ATVAAEEEEK SYRGVRKRPW GKFAAEIRDS
101: TRKGIRVWLG TFDTAEAAAL AYDQAAFALK GSLAVLNFPA DVVEESLRKM ENVNLNDGES PVIALKRKHS MRNRPRGKKK SSSSSTLTSS PSSSSSYSSS
201: SSSSSLSSRS RKQSVVMTQE SNTTLVVLED LGAEYLEELM RSCS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)