AT1G11290.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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Experimental Localisations and PPI |
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FP Images |
Arabidopsis cell culture (plastidal marker)
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
CHLORORESPIRATORY REDUCTION22 (CRR22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 48258 Blast hits to 14436 proteins in 289 species: Archae - 1; Bacteria - 2; Metazoa - 166; Fungi - 164; Plants - 47192; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:3791454..3793883 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 90871.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.96 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.01 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 809 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSSQLVQFST VPQIPNPPSR HRHFLSERNY IPANVYEHPA ALLLERCSSL KELRQILPLV FKNGLYQEHF FQTKLVSLFC RYGSVDEAAR VFEPIDSKLN 101: VLYHTMLKGF AKVSDLDKAL QFFVRMRYDD VEPVVYNFTY LLKVCGDEAE LRVGKEIHGL LVKSGFSLDL FAMTGLENMY AKCRQVNEAR KVFDRMPERD 201: LVSWNTIVAG YSQNGMARMA LEMVKSMCEE NLKPSFITIV SVLPAVSALR LISVGKEIHG YAMRSGFDSL VNISTALVDM YAKCGSLETA RQLFDGMLER 301: NVVSWNSMID AYVQNENPKE AMLIFQKMLD EGVKPTDVSV MGALHACADL GDLERGRFIH KLSVELGLDR NVSVVNSLIS MYCKCKEVDT AASMFGKLQS 401: RTLVSWNAMI LGFAQNGRPI DALNYFSQMR SRTVKPDTFT YVSVITAIAE LSITHHAKWI HGVVMRSCLD KNVFVTTALV DMYAKCGAIM IARLIFDMMS 501: ERHVTTWNAM IDGYGTHGFG KAALELFEEM QKGTIKPNGV TFLSVISACS HSGLVEAGLK CFYMMKENYS IELSMDHYGA MVDLLGRAGR LNEAWDFIMQ 601: MPVKPAVNVY GAMLGACQIH KNVNFAEKAA ERLFELNPDD GGYHVLLANI YRAASMWEKV GQVRVSMLRQ GLRKTPGCSM VEIKNEVHSF FSGSTAHPDS 701: KKIYAFLEKL ICHIKEAGYV PDTNLVLGVE NDVKEQLLST HSEKLAISFG LLNTTAGTTI HVRKNLRVCA DCHNATKYIS LVTGREIVVR DMQRFHHFKN 801: GACSCGDYW |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)