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AT1G11290.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (plastidal marker)

At1g11290-GFP (AA 1-100)plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity.
Computational
Description (TAIR10)
CHLORORESPIRATORY REDUCTION22 (CRR22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 48258 Blast hits to 14436 proteins in 289 species: Archae - 1; Bacteria - 2; Metazoa - 166; Fungi - 164; Plants - 47192; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC007259EMBL:CP002684
EnsemblPlants:AT1G11290EnsemblPlants:AT1G11290.1entrez:837671Gene3D:1.25.40.10
GeneID:837671Genevisible:Q3E6Q1GO:GO:0004519GO:GO:0006397
GO:GO:0008270GO:GO:0009507GO:GO:0016556GO:GO:0090305
Gramene:AT1G11290.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF605HOGENOM:HOG000237570
InParanoid:Q3E6Q1InterPro:IPR002885InterPro:IPR011990InterPro:IPR032867
KEGG:ath:AT1G11290OMA:SMDHYGAPaxDb:Q3E6Q1Pfam:PF01535
Pfam:PF13041Pfam:PF13812Pfam:PF14432Pfam:Q3E6Q1
Pfscan:PS51375PhylomeDB:Q3E6Q1PRIDE:Q3E6Q1PRO:PR:Q3E6Q1
PROSITE:PS51375ProteinModelPortal:Q3E6Q1Proteomes:UP000006548RefSeq:NP_172596.1
SMR:Q3E6Q1STRING:3702.AT1G11290.1SUPFAM:SSF48452TAIR:AT1G11290
tair10-symbols:CRR22TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.65900
UniProt:Q3E6Q1
Coordinates (TAIR10) chr1:-:3791454..3793883
Molecular Weight (calculated) 90871.70 Da
IEP (calculated) 7.96
GRAVY (calculated) -0.01
Length 809 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSQLVQFST VPQIPNPPSR HRHFLSERNY IPANVYEHPA ALLLERCSSL KELRQILPLV FKNGLYQEHF FQTKLVSLFC RYGSVDEAAR VFEPIDSKLN
101: VLYHTMLKGF AKVSDLDKAL QFFVRMRYDD VEPVVYNFTY LLKVCGDEAE LRVGKEIHGL LVKSGFSLDL FAMTGLENMY AKCRQVNEAR KVFDRMPERD
201: LVSWNTIVAG YSQNGMARMA LEMVKSMCEE NLKPSFITIV SVLPAVSALR LISVGKEIHG YAMRSGFDSL VNISTALVDM YAKCGSLETA RQLFDGMLER
301: NVVSWNSMID AYVQNENPKE AMLIFQKMLD EGVKPTDVSV MGALHACADL GDLERGRFIH KLSVELGLDR NVSVVNSLIS MYCKCKEVDT AASMFGKLQS
401: RTLVSWNAMI LGFAQNGRPI DALNYFSQMR SRTVKPDTFT YVSVITAIAE LSITHHAKWI HGVVMRSCLD KNVFVTTALV DMYAKCGAIM IARLIFDMMS
501: ERHVTTWNAM IDGYGTHGFG KAALELFEEM QKGTIKPNGV TFLSVISACS HSGLVEAGLK CFYMMKENYS IELSMDHYGA MVDLLGRAGR LNEAWDFIMQ
601: MPVKPAVNVY GAMLGACQIH KNVNFAEKAA ERLFELNPDD GGYHVLLANI YRAASMWEKV GQVRVSMLRQ GLRKTPGCSM VEIKNEVHSF FSGSTAHPDS
701: KKIYAFLEKL ICHIKEAGYV PDTNLVLGVE NDVKEQLLST HSEKLAISFG LLNTTAGTTI HVRKNLRVCA DCHNATKYIS LVTGREIVVR DMQRFHHFKN
801: GACSCGDYW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)