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AT5G57780.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.885
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT4G30410.1); Has 123 Blast hits to 123 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 123; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JHP1eggNOG:ENOG41115ZDEMBL:AB013396EMBL:BT014773
EMBL:BT015007EMBL:CP002688EnsemblPlants:AT5G57780EnsemblPlants:AT5G57780.1
entrez:835886GeneID:835886Gramene:AT5G57780.1hmmpanther:PTHR33124
hmmpanther:PTHR33124:SF5HOGENOM:HOG000238834KEGG:ath:AT5G57780ncoils:Coil
OMA:MNTYNMVPhylomeDB:Q9FJN6Proteomes:UP000006548RefSeq:NP_200586.1
STRING:3702.AT5G57780.1TAIR:AT5G57780UniGene:At.29313UniProt:Q9FJN6
Coordinates (TAIR10) chr5:-:23405505..23406008
Molecular Weight (calculated) 19439.80 Da
IEP (calculated) 11.46
GRAVY (calculated) -0.57
Length 167 amino acids
Sequence (TAIR10)
(BLAST)
001: MMNTYNMVKQ EFIKKWINTL HMLDSSIEHP LNVTERKNAI RLSSDLAMAA ARNGSTVWSR ALISRSGNKT ANKPMARRIL KKARNRMKNR CNILRRNGNF
101: TAKTWVRKRT DLLKSLVPGG ELIDDKDYLI RETLDYIVYL RAQVDVMRTV AAVDLFTRNL TNDRRNK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)