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AT3G60530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GATA transcription factor 4
Curator
Summary (TAIR10)
Encodes a member of the GATA factor family of zinc finger transcription factors.
Computational
Description (TAIR10)
GATA transcription factor 4 (GATA4); CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 2 (TAIR:AT2G45050.1); Has 1515 Blast hits to 1478 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 43; Fungi - 592; Plants - 818; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5641eggNOG:KOG1601EMBL:AF378881EMBL:AL138646
EMBL:AY039532EMBL:AY050476EMBL:CP002686EMBL:Y13651
EnsemblPlants:AT3G60530EnsemblPlants:AT3G60530.1entrez:825224Gene3D:3.30.50.10
GeneID:825224Genevisible:O49743GO:GO:0000977GO:GO:0001085
GO:GO:0001228GO:GO:0003682GO:GO:0003700GO:GO:0005634
GO:GO:0005667GO:GO:0006366GO:GO:0008270GO:GO:0009416
GO:GO:0030154GO:GO:0045944Gramene:AT3G60530.1hmmpanther:PTHR10071
hmmpanther:PTHR10071:SF207HOGENOM:HOG000238267InParanoid:O49743InterPro:IPR000679
InterPro:IPR013088InterPro:IPR016679KEGG:ath:AT3G60530OMA:FTHDLCV
PaxDb:O49743Pfam:O49743Pfam:PF00320Pfscan:PS50114
PhylomeDB:O49743PIR:T47864PIRSF:PIRSF016992PRIDE:O49743
PRO:PR:O49743PROSITE:PS00344PROSITE:PS50114ProteinModelPortal:O49743
Proteomes:UP000006548RefSeq:NP_191612.1scanprosite:PS00344SMART:SM00401
SMR:O49743STRING:3702.AT3G60530.1SUPFAM:SSF57716TAIR:AT3G60530
tair10-symbols:GATA4UniGene:At.20781UniProt:O49743
Coordinates (TAIR10) chr3:+:22373348..22374147
Molecular Weight (calculated) 26467.90 Da
IEP (calculated) 7.79
GRAVY (calculated) -0.56
Length 240 amino acids
Sequence (TAIR10)
(BLAST)
001: MDVYGMSSPD LLRIDDLLDF SNDEIFSSSS TVTSSAASSA ASSENPFSFP SSTYTSPTLL TDFTHDLCVP SDDAAHLEWL SRFVDDSFSD FPANPLTMTV
101: RPEISFTGKP RSRRSRAPAP SVAGTWAPMS ESELCHSVAK PKPKKVYNAE SVTADGARRC THCASEKTPQ WRTGPLGPKT LCNACGVRYK SGRLVPEYRP
201: ASSPTFVLTQ HSNSHRKVME LRRQKEQQES CVRIPPFQPQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)