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AT3G45170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : GATA transcription factor 14
Curator
Summary (TAIR10)
Encodes a member of the GATA factor family of zinc finger transcription factors.
Computational
Description (TAIR10)
GATA transcription factor 14 (GATA14); CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 5 (TAIR:AT5G66320.2); Has 1632 Blast hits to 1555 proteins in 180 species: Archae - 0; Bacteria - 0; Metazoa - 75; Fungi - 702; Plants - 796; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5641eggNOG:KOG1601EMBL:AL138649EMBL:CP002686
EMBL:DQ875133EnsemblPlants:AT3G45170EnsemblPlants:AT3G45170.1entrez:823653
Gene3D:3.30.50.10GeneID:823653GO:GO:0000977GO:GO:0001085
GO:GO:0001228GO:GO:0003682GO:GO:0003700GO:GO:0005634
GO:GO:0005667GO:GO:0006355GO:GO:0006366GO:GO:0008270
GO:GO:0030154GO:GO:0045944Gramene:AT3G45170.1hmmpanther:PTHR10071
hmmpanther:PTHR10071:SF163HOGENOM:HOG000112696InParanoid:Q9M1U2InterPro:IPR000679
InterPro:IPR013088KEGG:ath:AT3G45170OMA:LWREGPRPaxDb:Q9M1U2
Pfam:PF00320Pfam:Q9M1U2Pfscan:PS50114PhylomeDB:Q9M1U2
PIR:T47457PRO:PR:Q9M1U2PROSITE:PS00344PROSITE:PS50114
ProteinModelPortal:Q9M1U2Proteomes:UP000006548RefSeq:NP_190103.1scanprosite:PS00344
SMART:SM00401SMR:Q9M1U2STRING:3702.AT3G45170.1SUPFAM:SSF57716
TAIR:AT3G45170tair10-symbols:GATA14UniGene:At.53750UniProt:Q9M1U2
Coordinates (TAIR10) chr3:+:16537538..16538232
Molecular Weight (calculated) 23176.30 Da
IEP (calculated) 9.97
GRAVY (calculated) -0.96
Length 204 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGREDEEED LGTAMQKIPI PVNVFDKEPM DLDTVFGFAD GVREIIEDSN LLLEESREFD TNDSKPSRNF SNLPTATRGR LHAPKRSGNK RGRQKRLSFK
101: SPSDLFDSKF GITDKSCSHC GTRKTPLWRE GPRGAGTLCN ACGMRYRTGR LLPEYRPASS PDFKPNVHSN FHRKVMEIRR ERKSSPPNSF GFSESYHSTR
201: KLGF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)