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AT1G15720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : TRF-like 5
Curator
Summary (TAIR10)
Arabidopsis thaliana myb family transcription factor (At1g15720)
Computational
Description (TAIR10)
TRF-like 5 (TRFL5); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT5G58340.2); Has 513 Blast hits to 506 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 41; Plants - 402; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J38JeggNOG:ENOG410XXSPEMBL:AC034256EMBL:AK227390
EMBL:AY519536EMBL:BT003085EMBL:CP002684EnsemblPlants:AT1G15720
EnsemblPlants:AT1G15720.1entrez:838141Gene3D:1.10.10.60GeneID:838141
GO:GO:0000783GO:GO:0003691Gramene:AT1G15720.1hmmpanther:PTHR21717
HOGENOM:HOG000140269IntAct:Q9LMR2InterPro:IPR001005InterPro:IPR009057
InterPro:IPR017930KEGG:ath:AT1G15720OMA:SHWILEFPfam:PF00249
Pfscan:PS51294PhylomeDB:Q9LMR2PIR:D86291PROSITE:PS51294
Proteomes:UP000006548RefSeq:NP_173024.1SMART:SM00717SMR:Q9LMR2
STRING:3702.AT1G15720.1SUPFAM:SSF46689TAIR:AT1G15720tair10-symbols:TRFL5
UniGene:At.16909UniGene:At.48193UniProt:Q9LMR2
Coordinates (TAIR10) chr1:+:5406138..5407310
Molecular Weight (calculated) 44972.60 Da
IEP (calculated) 6.06
GRAVY (calculated) -0.69
Length 390 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVMDKWVAE FFLRRQLNPR VYAFPLLSAL KPVDSDDCVK LKLTAVLRDI SNSMIQGTVD EGMLDLLEIL EKLLLQEHSV IMGSLKSAYC WTAVECTLRF
101: MWPVNASDGF FGDALERIWR NRIGTLKEKE SDLVTRELLK WESDLNKAFE EPEIYQKIRE TNIRYNAISH LNQLLKEQWA LLGCSSLESE ARKRFLKRKD
201: SPYASRRGGN REKANDVEEV GGVENPDGVG KVNEHEQEHE PSLNKGEMLV ARELKDFLLE IQRLIDPITR QDQEPNNAME HSVDVTPQPD GANRTDAEDS
301: EGTSSSRRVR PHLPTPEPLN VSPLKKGRLE RPRPRRPMKF WTSEEVAALR EGVKEYGKSW KDIKNSYPVV FADRSEVDLK DKWRNLLGRQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)