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AT5G42700.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AP2/B3-like transcriptional factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT3G19184.1); Has 276 Blast hits to 264 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 271; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIZTeggNOG:ENOG4111SA1EMBL:AB007647EMBL:CP002688
EnsemblPlants:AT5G42700EnsemblPlants:AT5G42700.1entrez:834279Gene3D:2.40.330.10
GeneID:834279Genevisible:Q9FMZ4GO:GO:0003677GO:GO:0005634
GO:GO:0006351GO:GO:0006355Gramene:AT5G42700.1hmmpanther:PTHR31391
hmmpanther:PTHR31391:SF9HOGENOM:HOG000239798InParanoid:Q9FMZ4InterPro:IPR003340
InterPro:IPR015300KEGG:ath:AT5G42700OMA:YETIYLAPaxDb:Q9FMZ4
Pfam:PF02362Pfam:Q9FMZ4Pfscan:PS50863PhylomeDB:Q9FMZ4
PRIDE:Q9FMZ4PRO:PR:Q9FMZ4PROSITE:PS50863ProteinModelPortal:Q9FMZ4
Proteomes:UP000006548RefSeq:NP_199084.2SMART:SM01019SMR:Q9FMZ4
STRING:3702.AT5G42700.1SUPFAM:SSF101936TAIR:AT5G42700UniGene:At.30157
UniProt:Q9FMZ4
Coordinates (TAIR10) chr5:+:17122171..17124177
Molecular Weight (calculated) 24059.20 Da
IEP (calculated) 10.12
GRAVY (calculated) -0.46
Length 211 amino acids
Sequence (TAIR10)
(BLAST)
001: MVVEKQTKYE EFRLKRVEEN KKRMEALNLP KLSQILNSTS VKISPMKKRS IPRTPEKKMV DVKRVHIQRR GVGKKRDLLN RVYVSEEIRD EAISRANKFQ
101: DELGSGYPSF VKSMLQSHVS GGFWLGLPVQ FCKSHLGLHD GVITLIDEEG EEYETIYLAR KNGLSGGWMG FAVAHNLAYG DTLVFELVRR TAFKVYITRV
201: GSCGESSKDM S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)