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AT4G01730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.956
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DHHC-type zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT2G33640.1); Has 4882 Blast hits to 4865 proteins in 242 species: Archae - 0; Bacteria - 0; Metazoa - 2140; Fungi - 628; Plants - 869; Viruses - 0; Other Eukaryotes - 1245 (source: NCBI BLink).
Protein Annotations
BRENDA:2.3.1.225EC:2.3.1.225eggNOG:COG5273eggNOG:KOG1311
EMBL:AF104919EMBL:AL161492EMBL:CP002687EnsemblPlants:AT4G01730
EnsemblPlants:AT4G01730.1entrez:826911GeneID:826911Genevisible:Q9M115
GO:GO:0005789GO:GO:0008270GO:GO:0016021GO:GO:0019706
GO:GO:0030659Gramene:AT4G01730.1hmmpanther:PTHR22883hmmpanther:PTHR22883:SF53
HOGENOM:HOG000084071InParanoid:Q9M115InterPro:IPR001594KEGG:ath:AT4G01730
KO:K18932OMA:GYILWRYPaxDb:Q9M115Pfam:PF01529
Pfam:Q9M115Pfscan:PS50216PIR:C85022PIR:T02002
PRIDE:Q9M115PRO:PR:Q9M115PROSITE:PS50216Proteomes:UP000006548
RefSeq:NP_192082.4STRING:3702.AT4G01730.1TAIR:AT4G01730TMHMM:TMhelix
UniGene:At.54087UniProt:Q9M115
Coordinates (TAIR10) chr4:+:749574..752034
Molecular Weight (calculated) 57907.60 Da
IEP (calculated) 10.10
GRAVY (calculated) -0.19
Length 508 amino acids
Sequence (TAIR10)
(BLAST)
001: MTRRRHGWQR PLHPLQIVGA VIYSVLVAAF YVFLGFFLGN RIAVIALLSV FSSVAVSVIV LFVRCTAIDP TDKTSAKKKR KDKSKGVLMK LRVKVVLSQV
101: VVRFFRRLER KILRNFLRRT YLDPWKSSVQ LEPLLPFPLV MKDDDSVTPD PKEEDDISYC SLCDLEVKRS SKHCRTCNRC VEGFDHHCRW LNNCVGKKNY
201: TTFILLMVFV LLMLIIEGGT ALAVFVRCFV DKKGMEMELK RRLYVEFPQW ALATISIILV LFTAYGSAAM GQLFLFHVVL IRKGMRTYDY ILAMKEENQF
301: TEVDPFDELD SSSDESSDFD SPERLRPTFI SKFMCRKANE NQQRLSIKIE GDEQSPSSTL INKKPGFHVS INPWKLITLS SEKALQAAEK AKERLRKTKP
401: VSGTEENSLK PLPLETKFGL LLDPDNNNTV LQPSTTAAVK LQVSPGRFSS PRRRFSGSSS STVPSPKQKY RTNFDLKLTE VSRELESYIS RQVLCSVIKQ
501: DGSEASPR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)