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AT5G26660.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : myb domain protein 86
Curator
Summary (TAIR10)
a MYB gene encodes a transcriptional repressor of the C4H gene which is involved in the biosynthesis of sinapate esters.
Computational
Description (TAIR10)
myb domain protein 86 (MYB86); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 50 (TAIR:AT1G57560.1); Has 9095 Blast hits to 8321 proteins in 479 species: Archae - 0; Bacteria - 3; Metazoa - 831; Fungi - 514; Plants - 5926; Viruses - 6; Other Eukaryotes - 1815 (source: NCBI BLink).
Protein Annotations
BioGrid:17998eggNOG:COG5147eggNOG:KOG0048EMBL:AB005889
EMBL:AF058914EMBL:AF062913EMBL:AY099777EMBL:AY519629
EMBL:BT008740EMBL:CP002688EnsemblPlants:AT5G26660EnsemblPlants:AT5G26660.1
entrez:832723Gene3D:1.10.10.60GeneID:832723Genevisible:Q8LPH6
GO:GO:0003677GO:GO:0005634GO:GO:0006351GO:GO:0006355
Gramene:AT5G26660.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF474HOGENOM:HOG000113702
InParanoid:Q8LPH6IntAct:Q8LPH6InterPro:IPR001005InterPro:IPR009057
InterPro:IPR017930KEGG:ath:AT5G26660KO:K09422OMA:YWRSASS
PaxDb:Q8LPH6Pfam:PF00249Pfam:Q8LPH6Pfscan:PS51294
PhylomeDB:Q8LPH6PIR:T01196PIR:T51685PRO:PR:Q8LPH6
PROSITE:PS51294ProteinModelPortal:Q8LPH6Proteomes:UP000006548RefSeq:NP_850879.1
SMART:SM00717SMR:Q8LPH6STRING:3702.AT5G26660.1SUPFAM:SSF46689
TAIR:AT5G26660tair10-symbols:ATMYB86tair10-symbols:MYB86UniGene:At.227
UniProt:Q8LPH6
Coordinates (TAIR10) chr5:-:9331775..9333044
Molecular Weight (calculated) 39792.40 Da
IEP (calculated) 8.04
GRAVY (calculated) -0.69
Length 352 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRHSCCFKQ KLRKGLWSPE EDEKLLNYIT RHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SQDEESLIIE LHAALGNRWS QIATRLPGRT
101: DNEIKNFWNS CLKKKLRRKG IDPTTHKPLI TNELQSLNVI DQKLTSSEVV KSTGSINNLH DQSMVVSSQQ GPWWFPANTT TTNQNSAFCF SSSNTTTVSD
201: QIVSLISSMS TSSSPTPMTS NFSPAPNNWE QLNYCNTVPS QSNSIYSAFF GNQYTEASQT MNNNNPLVDQ HHHHQDMKSW ASEILHYTEH NQSSETVIEA
301: EVKPDIANYY WRSASSSSSP NQEAATLLHD ANVEVYGKNL QKLNNMVFDQ SL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)