AT4G38040.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Exostosin family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Exostosin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT5G11610.1); Has 1409 Blast hits to 1398 proteins in 111 species: Archae - 0; Bacteria - 12; Metazoa - 341; Fungi - 4; Plants - 961; Viruses - 3; Other Eukaryotes - 88 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:17867501..17869131 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48965.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.58 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||
| Length | 425 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTIVKPSQFS FSGGGSSPLC SLKSSLLTVA ILTFISLFYL SLNSLRTSPP SPVIVVTPIH VPHTFVNEYK TDNETPTMEE ETYSDVYHSP EAFRLNYAEM 101: EKRFKVYIYP DGDPNTFYQT PRKVTGKYAS EGYFFQNIRE SRFRTLDPDE ADLFFIPISC HKMRGKGTSY ENMTVIVQNY VDGLIAKYPY WNRTLGADHF 201: FVTCHDVGVR AFEGSPLLIK NTIRVVCSPS YNVGFIPHKD VALPQVLQPF ALPAGGNDVE NRTTLGFWAG HRNSKIRVIL AHVWENDTEL DISNNRINRA 301: TGHLVYQKRF YRTKFCICPG GSQVNSARIT DSIHYGCIPV ILSDYYDLPF NDILNWRKFA VVLREQDVYN LKQILKNIPH SEFVSLHNNL VKVQKHFQWN 401: SPPVKFDAFH MIMYELWLRH HVVKY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)