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AT5G04270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.798
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DHHC-type zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT3G09320.1); Has 5087 Blast hits to 5085 proteins in 250 species: Archae - 0; Bacteria - 0; Metazoa - 2174; Fungi - 756; Plants - 837; Viruses - 0; Other Eukaryotes - 1320 (source: NCBI BLink).
Protein Annotations
BRENDA:2.3.1.225EC:2.3.1.225eggNOG:COG5273eggNOG:KOG1315
EMBL:AL391716EMBL:BT022075EMBL:CP002688EnsemblPlants:AT5G04270
EnsemblPlants:AT5G04270.1entrez:830306GeneID:830306Genevisible:Q500Z2
GO:GO:0005789GO:GO:0008270GO:GO:0016021GO:GO:0019706
GO:GO:0030659Gramene:AT5G04270.1hmmpanther:PTHR22883hmmpanther:PTHR22883:SF19
HOGENOM:HOG000234777InParanoid:Q500Z2InterPro:IPR001594KEGG:ath:AT5G04270
OMA:CFAYKPLPaxDb:Q500Z2Pfam:PF01529Pfam:Q500Z2
Pfscan:PS50216PhylomeDB:Q500Z2PRIDE:Q500Z2PRO:PR:Q500Z2
PROSITE:PS50216Proteomes:UP000006548RefSeq:NP_196047.2STRING:3702.AT5G04270.1
TAIR:AT5G04270TMHMM:TMhelixUniGene:At.33151UniProt:Q500Z2
Coordinates (TAIR10) chr5:-:1182896..1184718
Molecular Weight (calculated) 28644.80 Da
IEP (calculated) 8.42
GRAVY (calculated) 0.25
Length 254 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFVYYVTLF VFIDDWVGLQ SSAGKLNALL FSLLASLCLF SLSICVLVDP GRVPASYAPD VEDSGWSNSN VTETRKCDKC FAYKPLRTHH CRVCRRCVLK
101: MDHHCLWINN CVGYANYKAF FILVFYATVA SIYSTVLLVC CAFKNGDSYA GNVPLKTFIV SCGIFMIGLS ITLGTLLCWH IYLITHNMTT IEHYDSKRAS
201: WLARKSGQSY RHQFDVGFYK NLTSVLGPNM IKWLCPTFTR NPEDGISFSA SRDS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)