suba logo
AT1G73390.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Endosomal targeting BRO1-like domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Endosomal targeting BRO1-like domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRO1 (InterPro:IPR004328); BEST Arabidopsis thaliana protein match is: Endosomal targeting BRO1-like domain-containing protein (TAIR:AT1G17940.1); Has 147 Blast hits to 147 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 24; Plants - 97; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGN8eggNOG:ENOG410ZJRHEMBL:AC012396EMBL:AY072312
EMBL:BT015943EMBL:CP002684EnsemblPlants:AT1G73390EnsemblPlants:AT1G73390.1
EnsemblPlants:AT1G73390.2EnsemblPlants:AT1G73390.3entrez:843674ExpressionAtlas:Q9FX34
Gene3D:1.25.40.280GeneID:843674Gramene:AT1G73390.1Gramene:AT1G73390.2
Gramene:AT1G73390.3hmmpanther:PTHR23032hmmpanther:PTHR23032:SF4HOGENOM:HOG000005873
InterPro:IPR004328OMA:RACEAFNPfam:PF03097Pfscan:PS51180
PhylomeDB:Q9FX34PIR:E96760PROSITE:PS51180Proteomes:UP000006548
RefSeq:NP_177482.1RefSeq:NP_974137.1RefSeq:NP_974138.1SMART:SM01041
STRING:3702.AT1G73390.1TAIR:AT1G73390UniGene:At.16891UniGene:At.34994
UniProt:Q9FX34
Coordinates (TAIR10) chr1:-:27591079..27594148
Molecular Weight (calculated) 46756.10 Da
IEP (calculated) 7.95
GRAVY (calculated) -0.36
Length 419 amino acids
Sequence (TAIR10)
(BLAST)
001: MGCFASRPND TGGNRRKPTS IGDVSVYVPG LRIPKPVEFS QSLGDQLPKT LVERLTALRT RIVVMANQEG PTITRTRRKT QHGGSTLADL HHALEDYIPV
101: LLGLTKDGSH LQFKVQFNWV NQEDEEEETA MSNVWYEILS VLHLMAMLQM SQANLLLLPR GSSDGYHPKI SEENRRASID IFLKAAGYLD CAVKHVLPHF
201: STEQRRSLPI DLAEGALRAL CLQALGQGVD IQLGMAIDSA KATLAVKRRL SCEMVKYWQQ AQDNLMNLPL ANGWGEKHML FVKWKYVEAK AAAYYYHGLI
301: LDEGNTEKSH GMAVAALQAA DECLKESKKA SEAFNTSSPT SRTPSLFGTM KYLSEKIPKE TSSKVRINRD LYSYEKIMET APTLPDFALA LKPDEYQLPS
401: VDASWSEASL RTKNTSNHI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)