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AT1G17940.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.950
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Endosomal targeting BRO1-like domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Endosomal targeting BRO1-like domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: BRO1 (InterPro:IPR004328); BEST Arabidopsis thaliana protein match is: Endosomal targeting BRO1-like domain-containing protein (TAIR:AT1G73390.3); Has 122 Blast hits to 122 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 25; Plants - 96; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGN8eggNOG:ENOG410ZJRHEMBL:AC034106EMBL:BT022052
EMBL:CP002684EnsemblPlants:AT1G17940EnsemblPlants:AT1G17940.1entrez:838373
Gene3D:1.25.40.280GeneID:838373Gramene:AT1G17940.1hmmpanther:PTHR23032
hmmpanther:PTHR23032:SF4InterPro:IPR004328KEGG:ath:AT1G17940OMA:SSCKVRI
Pfam:PF03097Pfscan:PS51180PIR:F86314PROSITE:PS51180
Proteomes:UP000006548RefSeq:NP_173236.2SMART:SM01041TAIR:AT1G17940
UniGene:At.41809UniProt:Q9LMT6
Coordinates (TAIR10) chr1:-:6169621..6172035
Molecular Weight (calculated) 45083.20 Da
IEP (calculated) 7.61
GRAVY (calculated) -0.32
Length 405 amino acids
Sequence (TAIR10)
(BLAST)
001: MGCFASTPKD SGGNRRKPTS IGEVSVYVPG LRIPRAVDFL QSLGDQLPKT LVERLTALRT RIVVMANQEG PTITRTRRKT QHGGSTLLDL HQALLDYLPV
101: VLGLTKDGSH LQFKVQFNWV NQEDEEEETE MSNVWYEVLS VLHLMAMLQM SQANLLLLPR GSSDGHNHPK VSEENRRTSI DIFLKAAGYL DCAVKHVLPQ
201: FSAEQRRSLP VDLAEGTLRA LCLQALGQGV DIQLGMAIDS SKATLAVKRR LSCEMVKYWQ QAQDNLMNLP LANGWGEKHG LFVKWKYVEA KAAAYYYHGL
301: ILDEGNTEKS HGMAVAALQA ADECFKESKK ASEAFNASAP TSRTPPLFGT MKYLTEKIPK DTSSKVRINR DLYSYEKIME TAPTLPDFAL ALKPDEYQLP
401: LAEAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)