AT1G58520.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.999 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : lipases;hydrolases, acting on ester bonds | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
RXW8; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: Early-responsive to dehydration stress protein (ERD4) (TAIR:AT1G10090.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:21733543..21738165 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 84852.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.28 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.27 | ||||||||||||||||||||||||||||
| Length | 746 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEISALLTSA GINISICIVL LSLYSILRKQ PANYCVYFGR RLVCGGARRY DPFWYERFVP SPSWLVKAWE TSEDELLAAA GLDAVVFLRM VIFSIRIFFI 101: VAVICIAFVL PVNYYGQPMV HKEIHLESSE VFTIENLKEG SKWLWVHCLA LYIITSAACL LLYFEYSTIA KMRLGHITGC ASKPSQFTVL IRAIPWSPEQ 201: SYSDTLSKFF TNYYSSSYVS HQMVYHNGII QRLLRDAERM CQTLKHVSPE INCKPSLRPC TFCGGPTATS SFHILSNEAD SVKGMELGEL TMTTTTTEQE 301: RSAAFVFFKT RYDALVVSEV LQSSNPMLWV TDLAPEPHDV YWKNLNIPYR QLWIRKIATL VGAVAFMFVF LIPVTFIQGL TQLVQLSHAF PFLRGILSKN 401: FINQVITGYL PSVILILFFY AVPPLMMYFS ALEGCISRSI RKKSACIKVL YFTIWNVFFV NILSGSVIRQ LNVFSSVRDI PAQLARAVPT QAGFFMTYCF 501: TSGWASLACE IMQPMALIWN LVAKVVTKNE DESYETLRFP YHTEIPRLLL FGLLGFTNSV IAPLILPFLL IYFFLAYLIY KNQILNVYIT KYESGGQYWP 601: IFHNTTIFSL ILTQIIALGF FGLKLSTVAS GFTIPLILLT LLFSEYCRQR FAPIFNKNPA QVLIDMDRAD EISGKMEELH KKLHNVYSQI PLHSQKSSSK 701: AECSNPFKKQ ELPDPEKLKP EEGDAIAKEL WGFQGNESGQ EHDTKS |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)