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AT1G10650.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SBP (S-ribonuclease binding protein) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SBP (S-ribonuclease binding protein) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT1G60610.3); Has 1212 Blast hits to 1212 proteins in 167 species: Archae - 0; Bacteria - 2; Metazoa - 524; Fungi - 0; Plants - 416; Viruses - 105; Other Eukaryotes - 165 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111S1XeggNOG:KOG1100EMBL:BT002880EMBL:BT004404
EMBL:CP002684EMBL:DQ059088EnsemblPlants:AT1G10650EnsemblPlants:AT1G10650.1
entrez:837608ExpressionAtlas:Q84JF9GeneID:837608GO:GO:0004842
GO:GO:0005634GO:GO:0008270GO:GO:0031347Gramene:AT1G10650.1
hmmpanther:PTHR10044hmmpanther:PTHR10044:SF108InterPro:IPR001841InterPro:IPR017066
KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-ncoils:Coil
OMA:YENNEHTPfscan:PS50089PhylomeDB:Q84JF9PIRSF:PIRSF036836
PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_172535.1SMR:Q84JF9
STRING:3702.AT1G10650.1TAIR:AT1G10650UniGene:At.43660unipathway:UPA00144
UniProt:Q84JF9
Coordinates (TAIR10) chr1:-:3524122..3525318
Molecular Weight (calculated) 38251.40 Da
IEP (calculated) 7.96
GRAVY (calculated) -0.63
Length 339 amino acids
Sequence (TAIR10)
(BLAST)
001: MLSGNNGNTA PPVFMNENQL QYQTNLRSNQ LHLLGNMGGG CTVDPVNYFA NDNLVPMIRP NKRGREAESI SNNIQRQQQK LQMSLNYNYN NTSVREEVPK
101: ENLVSTGLRL SYDDDEHNSS VTSASGSILA ASPIFQSLDD SLRIDLHRQK DEFDQFIKIQ AAQMAKGVRD MKQRHIASFL TTLEKGVSKK LQEKDHEIND
201: MNKKNKELVE RIKQVAMEAQ NWHYRAKYNE SVVNVLKANL QQAMSHNNSV IAAADQGKEG FGDSEIDDAA SSYIDPNNNN NNNMGIHQRM RCKMCNVKEV
301: SVLIVPCRHL SLCKECDVFT KICPVCKSLK SSCVQVFFS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)