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AT1G27460.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : no pollen germination related 1
Curator
Summary (TAIR10)
encodes a calmodulin-binding protein that is expressed in pollen, suspension culture cells, flowers, and fruits.
Computational
Description (TAIR10)
no pollen germination related 1 (NPGR1); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT2G43040.1); Has 2043 Blast hits to 1708 proteins in 322 species: Archae - 185; Bacteria - 626; Metazoa - 573; Fungi - 23; Plants - 162; Viruses - 0; Other Eukaryotes - 474 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQ09eggNOG:KOG4162EMBL:AC004557EMBL:AF428415
EMBL:BT010131EMBL:CP002684EnsemblPlants:AT1G27460EnsemblPlants:AT1G27460.1
entrez:839637Gene3D:1.25.40.10GeneID:839637GO:GO:0005516
GO:GO:0005886Gramene:AT1G27460.1hmmpanther:PTHR23083hmmpanther:PTHR23083:SF431
HOGENOM:HOG000238907InterPro:IPR011990InterPro:IPR013026InterPro:IPR019734
KEGG:ath:AT1G27460ncoils:CoilOMA:HELEMEAPfam:PF00515
Pfam:PF13181Pfscan:PS50293PhylomeDB:Q9CB03PROSITE:PS50293
Proteomes:UP000006548RefSeq:NP_564285.1SMART:SM00028SMR:Q9CB03
STRING:3702.AT1G27460.1SUPFAM:SSF48452TAIR:AT1G27460tair10-symbols:NPGR1
UniGene:At.67763UniGene:At.68559UniProt:Q9CB03
Coordinates (TAIR10) chr1:+:9534977..9537424
Molecular Weight (calculated) 76875.70 Da
IEP (calculated) 5.82
GRAVY (calculated) -0.15
Length 694 amino acids
Sequence (TAIR10)
(BLAST)
001: MLCACSGEQF RFEDQPGSPE SLATRDFSAS GLSSRNGGGD WDSKLEDIQV DEAESTLKEA LSLNYEEARA LLGRLEYQRG NFDAALQVFK GIDIKVLTPR
101: IIKAIVEKTL PCKPRSKAVI VPPTTMSMHS VSLLLEAILL KARSLEELGS YKEAAEECKI ILDVVENALP SGMPDGISGF AKLQDIFQKA LELLPLLWKK
201: AGNHHETIAS YRRALSRPWN LDPQRLAVTQ KSLALVLLYG SVEACPKDNI EEAIVLLMLL VKKMVVGDIQ WDPELMDHLT YALSMTGQFE VLANYLEQTL
301: PGVYTRGERW YLLSLCYSAA GIDKAAINLL KMALGPSESR QIPHIPLLLF GAKLCSKDPK HSRDGINFAH RLLDLGNSQS EHLLSQAHKF LGVCYGNAAR
401: SSKLDSERVF LQKKSLFSLN EAAKRGKADP ELDVIFNLSV ENAVQRNVQA ALDGAVEYSS MVGGVSTKGW KHLAIVLSAE KRLKDAESIL DFTMEEAGDI
501: EKIELLRLKA VLQMAQEQPK KAMKTCSSLL GLIRAQEKSE QSESLLQKFE TEAWQDLASV YGKLGSWSDA ETCLEKARSM CYYSPRGWNE TGLCLEAKSL
601: HEEALISFFL SLSIEPDHVP SIVSIAEVMM KSGDESLPTA KSFLMNALRL DPRNHDAWMK LGHVAKKQGL SQQAAEFYQA AYELELSAPV QSFI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)