suba logo
AT4G24760.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.707
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase, catalytic domain (InterPro:IPR001375); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G14390.1); Has 3811 Blast hits to 3801 proteins in 821 species: Archae - 8; Bacteria - 1310; Metazoa - 620; Fungi - 194; Plants - 289; Viruses - 6; Other Eukaryotes - 1384 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1073eggNOG:KOG1552EMBL:AL035356EMBL:AL161562
EMBL:AY084912EMBL:BT000963EMBL:CP002687EnsemblPlants:AT4G24760
EnsemblPlants:AT4G24760.1entrez:828578ESTHER:arath-F22K18.40Gene3D:3.40.50.1820
GeneID:828578GO:GO:0016787Gramene:AT4G24760.1hmmpanther:PTHR12277
hmmpanther:PTHR12277:SF42HOGENOM:HOG000007142InterPro:IPR022742InterPro:IPR029058
KEGG:ath:AT4G24760MEROPS:S09.A04ncoils:CoilOMA:IRYPMAT
Pfam:PF12146Pfam:PF12695PhylomeDB:Q9SB70PIR:T05558
Proteomes:UP000006548RefSeq:NP_194207.1SUPFAM:SSF53474TAIR:AT4G24760
UniGene:At.42697UniProt:Q9SB70
Coordinates (TAIR10) chr4:-:12761482..12763564
Molecular Weight (calculated) 41938.40 Da
IEP (calculated) 9.35
GRAVY (calculated) -0.55
Length 365 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGVTSSMAA KLAFFPPNPP SYKLVRDETT ELFLMSPFPH RENVDILRLP TRRGTEIVAM YIRYPMAVTT LLYSHGNAAD IGQMYELFIE LSIHLRVNLM
101: GYDYSGYGQS SGKPTEQNTY ADIEAAYKCL EENYGAKQEN IILYGQSVGS GPTVDLAARL PRLRASILHS PILSGLRVMY PVKRTYWFDI YKNIDKITLV
201: RCPVLVIHGT ADDVVDFSHG KQLWELCQEK YEPLWLKGGN HCDLELFPEY IGHLKKFVSA VEKSASKRNS SFSRRSMEGC EQPPRHSVDA PRKSKDGREK
301: PRKSIDRLRF QGYKLSHIEK PEKLKVPFEE MERSRRSVDI YRDKSQPMER ARKSVDWLDR SRATE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)