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AT1G06730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.941
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pfkB-like carbohydrate kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: D-ribose catabolic process; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT3G59480.1); Has 14630 Blast hits to 14623 proteins in 2218 species: Archae - 286; Bacteria - 12051; Metazoa - 104; Fungi - 33; Plants - 346; Viruses - 0; Other Eukaryotes - 1810 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0524eggNOG:KOG2855EMBL:AF361817EMBL:CP002684
EnsemblPlants:AT1G06730EnsemblPlants:AT1G06730.1entrez:837184Gene3D:3.40.1190.20
GeneID:837184GO:GO:0005634GO:GO:0005737GO:GO:0016301
Gramene:AT1G06730.1gramene_pathway:2.7.1.4gramene_pathway:PWY-621hmmpanther:PTHR10584
hmmpanther:PTHR10584:SF184HOGENOM:HOG000239760InterPro:IPR011611InterPro:IPR029056
KEGG:ath:AT1G06730OMA:CNGYDFDPfam:PF00294PhylomeDB:Q9ASV2
Proteomes:UP000006548RefSeq:NP_172158.1SMR:Q9ASV2STRING:3702.AT1G06730.1
SUPFAM:SSF53613TAIR:AT1G06730UniGene:At.28713UniProt:Q9ASV2
Coordinates (TAIR10) chr1:+:2067633..2070049
Molecular Weight (calculated) 52765.40 Da
IEP (calculated) 6.24
GRAVY (calculated) 0.02
Length 488 amino acids
Sequence (TAIR10)
(BLAST)
001: MYHHAFSLKF HSFSPHYALS LSNFSTQSPN PLLPPFARVP HVTSSVCLRC RSSAADVSPV IYADGSSSIC SFGETGDVAV VEKPIDVSTL GNLCVDIVLS
101: VHELPPPSRG ERKALMDELS MSPPDKKYWE AGGNCNMAIA AARLGLHCVA IGHVGDEIYG EFLLDVLHEE GIGTVALNGG TNEKDTSSFC ETLICWVLVD
201: PLQRHGFCSR ADFKEEPAFS WITDLSDEVK MAIRQSKVLF CNGYDFDDFS PSFIMSTIDY AAKVGTAIFF DPGPRGKSLS KGTPDERRAL AHFLRMSDVL
301: LLTSEEVEAL TGIRNPVKAG QEILRNGKGT KWVIVKMGPK GSILVTKSSV SVAPAFKVEV VDTVGCGDSF VAAIALGYIR NMPLVNTLTI ANAVGAATAM
401: GCGAGRNVAK RHQVVDLMKA SKLNDEEKFF EQLLAENSES SRINLLSKGM IKDGRSNKQL IETISMEKVV SELLAELELG RCCVKASS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)