suba logo
AT3G06200.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: guanylate kinase activity; INVOLVED IN: purine nucleotide metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Guanylate kinase (InterPro:IPR008144), Guanylate kinase/L-type calcium channel (InterPro:IPR008145), Guanylate kinase, conserved site (InterPro:IPR020590), Guanylate kinase, sub-group (InterPro:IPR017665); BEST Arabidopsis thaliana protein match is: guanylate kinase 1 (TAIR:AT2G41880.1); Has 9322 Blast hits to 9318 proteins in 2721 species: Archae - 1; Bacteria - 5493; Metazoa - 1233; Fungi - 169; Plants - 119; Viruses - 7; Other Eukaryotes - 2300 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G06200-MONOMEREC:2.7.4.8eggNOG:COG0194eggNOG:KOG0707
EMBL:AC018907EMBL:AF378877EMBL:AF446862EMBL:CP002686
EnsemblPlants:AT3G06200EnsemblPlants:AT3G06200.1entrez:819794Gene3D:3.40.50.300
GeneID:819794Genevisible:Q94JM2GO:GO:0004385GO:GO:0005524
GO:GO:0009507GO:GO:0048638Gramene:AT3G06200.1hmmpanther:PTHR23117
hmmpanther:PTHR23117:SF12HOGENOM:HOG000037639InParanoid:Q94JM2InterPro:IPR008144
InterPro:IPR008145InterPro:IPR017665InterPro:IPR020590InterPro:IPR027417
KEGG:00230+2.7.4.8KEGG:ath:AT3G06200KO:K00942OMA:TSRPMRP
PaxDb:Q94JM2Pfam:PF00625Pfam:Q94JM2Pfscan:PS50052
PhylomeDB:Q94JM2PRIDE:Q94JM2PRO:PR:Q94JM2PROSITE:PS00856
PROSITE:PS50052ProteinModelPortal:Q94JM2Proteomes:UP000006548RefSeq:NP_566276.1
scanprosite:PS00856SMART:SM00072SMR:Q94JM2STRING:3702.AT3G06200.1
SUPFAM:SSF52540TAIR:AT3G06200TIGRfam:TIGR03263TIGRFAMs:TIGR03263
UniGene:At.19098UniProt:Q94JM2
Coordinates (TAIR10) chr3:+:1877678..1878526
Molecular Weight (calculated) 31779.50 Da
IEP (calculated) 9.30
GRAVY (calculated) -0.21
Length 282 amino acids
Sequence (TAIR10)
(BLAST)
001: MIRKLCSSFS RSIIFPNKPI FIPRSFPQPL RHSSALSYSS LKMTDTHIPG NPNSSPIQSP TKPESLRSLE FQLGSSFTAD PIIPPPNQIV IVISGPSGVG
101: KDAVINKLRE VREGLHFVVT ATSRPMRPGE VDGKDYFFVS RDQFLSMVEN EELLEYALVY GEYKGIPKKQ IQEFMAKGED IVLRVDIQGA QTLRRILGNS
201: AVFIFLVAES ELAMVERLID RKTESQEELL VRVATAREEV RHLKNFDYVV VNAKGRLDDA VNRVESIIDA EKSKVHQRIV RI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)