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AT4G20980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:21433285 (2011): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Eukaryotic translation initiation factor 3 subunit 7 (eIF-3); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Eukaryotic translation initiation factor 3, subunit 7 (InterPro:IPR007783); BEST Arabidopsis thaliana protein match is: Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) (TAIR:AT5G44320.1); Has 517 Blast hits to 503 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 230; Fungi - 127; Plants - 75; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Protein Annotations
BioGrid:13136eggNOG:ENOG410XP1EeggNOG:KOG2479EMBL:AF291714
EMBL:AK317111EMBL:AL080282EMBL:AL161554EMBL:BT044604
EMBL:CP002687EnsemblPlants:AT4G20980EnsemblPlants:AT4G20980.1EnsemblPlants:AT4G20980.2
EnsemblPlants:AT4G20980.3EnsemblPlants:AT4G20980.4entrez:827845GeneID:827845
Genevisible:P56820GO:GO:0001731GO:GO:0003743GO:GO:0005852
GO:GO:0006446GO:GO:0016282GO:GO:0033290Gramene:AT4G20980.1
Gramene:AT4G20980.2Gramene:AT4G20980.3Gramene:AT4G20980.4HAMAP:MF_03003
hmmpanther:PTHR12399HOGENOM:HOG000241593InParanoid:P56820InterPro:IPR007783
iPTMnet:P56820KEGG:ath:AT4G20980KO:K03251ncoils:Coil
OMA:PFCKGDRPANTHER:PTHR12399PaxDb:P56820Pfam:P56820
Pfam:PF05091PhylomeDB:P56820PIR:T10640PIRSF:PIRSF016281
PRIDE:P56820PRO:PR:P56820ProteinModelPortal:P56820Proteomes:UP000006548
Reactome:R-ATH-156827Reactome:R-ATH-72689Reactome:R-ATH-72695Reactome:R-ATH-72702
RefSeq:NP_001031683.1RefSeq:NP_001031684.1RefSeq:NP_001190783.1RefSeq:NP_193830.1
STRING:3702.AT4G20980.1TAIR:AT4G20980UniGene:At.22289UniProt:P56820
Coordinates (TAIR10) chr4:+:11216997..11218772
Molecular Weight (calculated) 66727.90 Da
IEP (calculated) 5.49
GRAVY (calculated) -0.67
Length 591 amino acids
Sequence (TAIR10)
(BLAST)
001: MVTEAFEFVA VPFNSDGWGP PDASDVSSSA SPTSVAAANL LPNVPFASFS RSDKLGRVAD WTRNLSNPSA RPNTGSKSDP SAVFDFSAFA IDEGFGLASS
101: GGNPDEDAAF RLVDGKPPPR PKFGPKWRFN PHHNRNQLPQ RRDEEVEAKK RDAEKERARR DRLYNNNRNN IHHQRREAAA FKSSVDIQPE WNMLEQIPFS
201: TFSKLSYTVQ EPEDLLLCGG LEYYNRLFDR ITPKNERRLE RFKNRNFFKV TTSDDPVIRR LAKEDKATVF ATDAILAALM CAPRSVYSWD IVIQRVGNKL
301: FFDKRDGSQL DLLSVHETSQ EPLPESKDDI NSAHSLGVEA AYINQNFSQQ VLVRDGKKET FDEANPFANE GEEIASVAYR YRRWKLDDNM HLVARCELQS
401: VADLNNQRSF LTLNALNEFD PKYSGVDWRQ KLETQRGAVL ATELKNNGNK LAKWTAQALL ANADMMKIGF VSRVHPRDHF NHVILSVLGY KPKDFAGQIN
501: LNTSNMWGIV KSIVDLCMKL SEGKYVLVKD PSKPQVRIYE VPPDAFENDY VEEPLPEDEQ VQPTEENTEG AEASVAATKE TEEKKADDAQ A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)