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AT5G43960.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:26781341 (2016): plasma membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:21433285 (2011): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: transport, nucleocytoplasmic transport; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (TAIR:AT3G25150.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YV57eggNOG:KOG0116EMBL:AB006703EMBL:AY080755
EMBL:AY114017EMBL:CP002688EnsemblPlants:AT5G43960EnsemblPlants:AT5G43960.1
entrez:834419ExpressionAtlas:Q9FND0Gene3D:3.10.450.50Gene3D:3.30.70.330
GeneID:834419GO:GO:0000166GO:GO:0003676GO:GO:0005622
GO:GO:0006810Gramene:AT5G43960.1hmmpanther:PTHR10693hmmpanther:PTHR10693:SF29
HOGENOM:HOG000239086IntAct:Q9FND0InterPro:IPR000504InterPro:IPR002075
InterPro:IPR012677InterPro:IPR018222InterPro:IPR032710KEGG:ath:AT5G43960
OMA:VVHEHRAPfam:PF00076Pfam:PF02136Pfscan:PS50102
Pfscan:PS50177PhylomeDB:Q9FND0PROSITE:PS50102PROSITE:PS50177
Proteomes:UP000006548RefSeq:NP_199209.1SMART:SM00360SMR:Q9FND0
STRING:3702.AT5G43960.1SUPFAM:SSF54427SUPFAM:SSF54928TAIR:AT5G43960
UniGene:At.24860UniProt:Q9FND0
Coordinates (TAIR10) chr5:-:17689154..17691653
Molecular Weight (calculated) 50125.00 Da
IEP (calculated) 4.65
GRAVY (calculated) -0.63
Length 450 amino acids
Sequence (TAIR10)
(BLAST)
001: MATPYPGATQ VGSYFVGQYY QVLQQQPDLI HQFYSEPSRA IRIDGDSTET ANSLLHIHNM VMSLNFTAIE VKTINSVESW EGGVLVVVSG SVKTKEFSNR
101: RSFVQTFFLA PQEKGYFVLS DVFLFVDEGT VYYHQPSYLS EIKHEAQLNP PTRHPDPQVS DYVLEEEASD YVNAVQIKDD LVDKYSLQED QHQPQHEDYE
201: DEVAIEETPR EEVAVDVVHE HRAAPVEEPV GEKSKMSYAS ILKVAKEAAT VPVAATQPSY NKSSQDINEW DQPMRTPSPQ LAAPLAPIQQ SNSSTYVSDY
301: GAEAEDGSGF EDFEFKSVYV RNLPSDISAS EIEEEFKNFG TIKPDGVFLR TRKDVMGVCY AFVEFEDMTS VENAIKASPI YLGGRQVYIE ERRPNPAGVR
401: GARRGGGRGR GGYPTEAPRG RFGGRGSGRG NQDGGDYRPR GNGYYRGGGR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)