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AT3G19220.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : protein disulfide isomerases
Curator
Summary (TAIR10)
Encodes a zinc finger protein that is similar to a subgroup of DnaJ and is involved in cotyledon chloroplast biogenesis. Cyo1 is localized to the thylakoid membrane and has protein disulfide isomerase activity in vivo.Cyo1 is more highly expressed in light grown seedlings. Loss of function mutants have albino cotyledons and abnormal plastids.
Computational
Description (TAIR10)
SNOWY COTYLEDON 2 (SCO2); Has 34 Blast hits to 34 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-578-MONOMERBioGrid:6789BRENDA:5.3.4.1EC:5.3.4.1
eggNOG:ENOG410IZZVeggNOG:ENOG411219REMBL:AP000419EMBL:AY059925
EMBL:AY081606EMBL:CP002686EMBL:EU402409EnsemblPlants:AT3G19220
EnsemblPlants:AT3G19220.1entrez:821456GeneID:821456Genevisible:Q93YN0
GO:GO:0003756GO:GO:0006457GO:GO:0009507GO:GO:0009535
GO:GO:0009658GO:GO:0043621GO:GO:0046872Gramene:AT3G19220.1
hmmpanther:PTHR36035hmmpanther:PTHR36035:SF1HOGENOM:HOG000005868InParanoid:Q93YN0
IntAct:Q93YN0KEGG:ath:AT3G19220OMA:KEVICKCPaxDb:Q93YN0
Pfam:Q93YN0PhylomeDB:Q93YN0PRIDE:Q93YN0PRO:PR:Q93YN0
ProteinModelPortal:Q93YN0Proteomes:UP000006548RefSeq:NP_566627.1STRING:3702.AT3G19220.1
TAIR:AT3G19220tair10-symbols:CYO1tair10-symbols:SCO2UniGene:At.26601
UniProt:Q93YN0
Coordinates (TAIR10) chr3:+:6659207..6660488
Molecular Weight (calculated) 20843.80 Da
IEP (calculated) 7.90
GRAVY (calculated) -0.53
Length 187 amino acids
Sequence (TAIR10)
(BLAST)
001: MFRLYPNCSL PSHRPLVFLP RLPSRSLRCR AAADIPLGDG IRLPREADST SDTARSRDVS VAAGGNGEGA KWRKRRLLWS KSGESYLVDD GDALPLPMTY
101: PDTSPVSPDV IDRRLQCDPV VEDCREVVYE WTGKCRSCQG SGTVSYYKKR GKEVICKCIP CQGIGYVQKI TSRTDIEVME DLDNEPS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)