suba logo
AT1G55950.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.993
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : DNA-binding storekeeper protein-related transcriptional regulator
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA-binding storekeeper protein-related transcriptional regulator; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related transcriptional regulator (TAIR:AT2G01370.1); Has 130 Blast hits to 130 proteins in 10 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 126; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:842046EMBL:AC002304EMBL:CP002684EnsemblPlants:AT1G55950
EnsemblPlants:AT1G55950.1entrez:842046GeneID:842046GO:GO:0003677
Gramene:AT1G55950.1hmmpanther:PTHR31662hmmpanther:PTHR31662:SF1InterPro:IPR007592
KEGG:ath:AT1G55950Pfam:PF04504PhylomeDB:Q9LG15Proteomes:UP000006548
RefSeq:NP_175991.1STRING:3702.AT1G55950.1TAIR:AT1G55950UniGene:At.66965
UniProt:Q9LG15
Coordinates (TAIR10) chr1:-:20926839..20927450
Molecular Weight (calculated) 23414.80 Da
IEP (calculated) 8.60
GRAVY (calculated) -0.95
Length 203 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKKNKRSQQ KNKCLKPEKD PSTVKRLLED PPRKKRYLQP LENPPTESYG DDEKMETEEE GEKYLGKNLP ASAFIIVAAE RHDSDSYSET ELEKKICGSV
101: VVAKMNDDKM VSTDTKKKYF QRILSDDDKI VLLQGMVDFQ NDKGTISYDD MTGFIDTVKN IISFQANSRQ FTTKIRRLKD KFVQKRNKGV DENSLANVEI
201: YEI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)