AT3G23540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : alpha/beta-Hydrolases superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
alpha/beta-Hydrolases superfamily protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G14290.1); Has 4133 Blast hits to 2975 proteins in 904 species: Archae - 22; Bacteria - 1788; Metazoa - 456; Fungi - 251; Plants - 153; Viruses - 0; Other Eukaryotes - 1463 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:8443665..8448070 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63024.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.89 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.53 | ||||||||||||||||||||||||||||
| Length | 566 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDQLVNFIIR PPRAEYDPEH DLLEKKFMMK GRWYQRKDLE VKNSRGDVLQ CSHYMPVERP EGKPLPCVIY CHGNSGCRAD GSEAAIVLLP SNITVFTLDF 101: SGSGLSGGEH VTLGWNEKDD LKAVVEFLRQ DGNISLIGLW GRSMGAVTSL MYGVEDPSIA GMILDSPFSD LVDLMMELVD TYKFRLPKFT VKFAIQFMRR 201: AIQKKAKFDI MELNTIKVAK ASFVPVLFGH ALDDDFIRPH HSDRIYEAYV GDKNIIKFPG DHNSPRPPFY FDSINIFFHN VLQPPEVVGP TFYDPLDDYF 301: ANGSWGTMND TNIPQSSVQK SLAAGSISEA INEVRKKRPM SRTDVPSNVT LTSNGSPSET KEKENPDGRG SSSSPDMISF DLSDGNQYPP HLRMALDDDQ 401: YVEYQMEDMA DFPSNAEEEE RMLMKAVMES LKDLEVQSQQ KKEPPETRIH GGSAFLNAVQ CISSREESTS TRANQSETDS ASSPVTRSQD QLPSSSESNP 501: PSETSSSLAR TVTSSVPGSL SQKESETGDV PGTKATVTVE RSSSAPGKVL DGLIRRWDLN FFKNNK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)