suba logo
AT1G10010.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.751
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : amino acid permease 8
Curator
Summary (TAIR10)
Encodes a high affinity amino acid transporter that is probably responsible for import of organic nitrogen into developing seeds. One of eight gene family members that encode amino acid permeases. Most closely related to AAP1 (75%) identity.
Computational
Description (TAIR10)
amino acid permease 8 (AAP8); CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid permease 1 (TAIR:AT1G58360.1); Has 2959 Blast hits to 2943 proteins in 246 species: Archae - 0; Bacteria - 24; Metazoa - 771; Fungi - 529; Plants - 1378; Viruses - 0; Other Eukaryotes - 257 (source: NCBI BLink).
Protein Annotations
BioGrid:22776eggNOG:COG0814eggNOG:KOG1303EMBL:AC004122
EMBL:CP002684EnsemblPlants:AT1G10010EnsemblPlants:AT1G10010.1entrez:837536
GeneID:837536Genevisible:O80592GO:GO:0005886GO:GO:0006865
GO:GO:0015293GO:GO:0016020GO:GO:0016021Gramene:AT1G10010.1
hmmpanther:PTHR22950hmmpanther:PTHR22950:SF278HOGENOM:HOG000238530InParanoid:O80592
InterPro:IPR013057KEGG:ath:AT1G10010OMA:HKANCFHPaxDb:O80592
Pfam:O80592Pfam:PF01490PhylomeDB:O80592PIR:T00620
PRIDE:O80592PRO:PR:O80592ProteinModelPortal:O80592Proteomes:UP000006548
RefSeq:NP_172472.1SABIO-RK:O80592STRING:3702.AT1G10010.1TAIR:AT1G10010
tair10-symbols:AAP8tair10-symbols:ATAAP8TCDB:2.A.18.2.5TMHMM:TMhelix
UniGene:At.51545UniProt:O80592
Coordinates (TAIR10) chr1:+:3265976..3268726
Molecular Weight (calculated) 51818.20 Da
IEP (calculated) 9.16
GRAVY (calculated) 0.48
Length 475 amino acids
Sequence (TAIR10)
(BLAST)
001: MDAYNNPSAV ESGDAAVKSV DDDGREKRTG TFWTASAHII TAVIGSGVLS LAWAIAQLGW VAGTTVLVAF AIITYYTSTL LADCYRSPDS ITGTRNYNYM
101: GVVRSYLGGK KVQLCGVAQY VNLVGVTIGY TITASISLVA IGKSNCYHDK GHKAKCSVSN YPYMAAFGIV QIILSQLPNF HKLSFLSIIA AVMSFSYASI
201: GIGLAIATVA SGKIGKTELT GTVIGVDVTA SEKVWKLFQA IGDIAFSYAF TTILIEIQDT LRSSPPENKV MKRASLVGVS TTTVFYILCG CIGYAAFGNQ
301: APGDFLTDFG FYEPYWLIDF ANACIALHLI GAYQVYAQPF FQFVEENCNK KWPQSNFINK EYSSKVPLLG KCRVNLFRLV WRTCYVVLTT FVAMIFPFFN
401: AILGLLGAFA FWPLTVYFPV AMHIAQAKVK KYSRRWLALN LLVLVCLIVS ALAAVGSIIG LINSVKSYKP FKNLD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)