AT3G19490.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : sodium:hydrogen antiporter 1 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of Na+/H+ antiporter-Putative family | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
sodium:hydrogen antiporter 1 (NHD1); FUNCTIONS IN: potassium:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: sodium ion transport; LOCATED IN: integral to membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Na+/H+ antiporter NhaD-like (InterPro:IPR018390), Divalent ion symporter (InterPro:IPR004680); BEST Arabidopsis thaliana protein match is: Na+/H+ antiporter 2 (TAIR:AT1G49810.1); Has 2659 Blast hits to 2653 proteins in 794 species: Archae - 96; Bacteria - 1787; Metazoa - 39; Fungi - 48; Plants - 76; Viruses - 0; Other Eukaryotes - 613 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:6754875..6758127 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61372.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.59 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.53 | ||||||||||||||||||||||||||||||||
| Length | 576 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAVFPIGSHF APPHQLTKRH VIATSSPISI STRLPQNVSF SKVSGVTGST RLSKHGVLVR AEDKIRSSSS PSSLDEPIDE DLMDSSGLCD PLCSVDEPSS 101: SYFEANYQPK TDIIKALAIL AAALTGTAAI NHSWVAANQD VAMALLFGIG YAGIIFEESL AFNKSGIGLL MAVSLWVVRS IGAPSTEIAV LDLQHATAEV 201: SEIVFFLLGA MTIVEIVDAH QGFKLVTDNI TTRKPKTLLW VVGFVTFFLS SILDNLTSTI VMVSLIRKLV PQSEYRKLLG GVVVIAANAG GAWTPIGDVT 301: TTMLWIHGQI STLPTMKDLF LPSVVSLAVP LALMSLTSEV NGKEQDPKDV LASEKMAPRG KLVFGVGLGA LVFVPVFKAL TGLPPYMGIL LGLGVLWILT 401: DAIHYGESER QKLKVPQALS RIDTQGALFF LGILLSVSSL EAAGILREIA NYLDANIPNV ELIASAIGVV SAIIDNVPLV AATMGMYDLT SFPQDSEFWQ 501: LIAFCAGTGG SMLVIGSAAG VAFMGMEKVD FFWYFRKVSG FAFAGYAAGI AAYLAVHNLH FEIPTTVAQI PFLTGS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)