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AT1G07220.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.719
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Arabidopsis thaliana protein of unknown function (DUF821)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro:IPR008539); BEST Arabidopsis thaliana protein match is: Arabidopsis thaliana protein of unknown function (DUF821) (TAIR:AT5G23850.1); Has 670 Blast hits to 661 proteins in 130 species: Archae - 0; Bacteria - 41; Metazoa - 224; Fungi - 131; Plants - 246; Viruses - 2; Other Eukaryotes - 26 (source: NCBI BLink).
Protein Annotations
CAZy:GT90eggNOG:ENOG410XT5UeggNOG:KOG2458EMBL:AC067971
EMBL:CP002684EMBL:KJ139025EnsemblPlants:AT1G07220EnsemblPlants:AT1G07220.1
entrez:837233GeneID:837233GO:GO:0016021GO:GO:0016740
Gramene:AT1G07220.1hmmpanther:PTHR12203hmmpanther:PTHR12203:SF13InterPro:IPR006598
KEGG:ath:AT1G07220OMA:MFTIWGIPfam:PF05686PhylomeDB:Q9LML4
PIR:D86207Proteomes:UP000006548RefSeq:NP_172202.1SMART:SM00672
TAIR:AT1G07220TMHMM:TMhelixUniGene:At.17129UniGene:At.48162
UniProt:Q9LML4
Coordinates (TAIR10) chr1:-:2217073..2219379
Molecular Weight (calculated) 59238.10 Da
IEP (calculated) 9.19
GRAVY (calculated) -0.50
Length 507 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLRLRLRLP HKSSPRSPSY LLLCVLALSF FSFTALLFYK VDDFIAQTKT LAGHNLEPTP WHIFPRKSFS AATKHSQAYR ILQCSYFSCP YKAVVQPKSL
101: HSESGSGRQT HQPQCPDFFR WIHRDLEPWA KTGVTKEHVK RAKANAAFRV VILSGKLYVD LYYACVQSRM MFTIWGILQL LTKYPGMVPD VDMMFDCMDK
201: PIINQTEYQS FPVPLFRYCT NEAHLDIPFP DWSFWGWSET NLRPWEEEFG DIKQGSRRRS WYNKQPRAYW KGNPDVVSPI RLELMKCNHS RLWGAQIMRQ
301: DWAEEAKGGF EQSKLSNQCN HRYKIYAEGY AWSVSLKYIL SCGSMTLIIS PEYEDFFSRG LLPKENYWPI SPTDLCRSIK YAVDWGNSNP SEAETIGKRG
401: QGYMESLSMN RVYDYMFHLI TEYSKLQKFK PEKPASANEV CAGSLLCIAE QKERELLERS RVVPSLDQPC KFPVEDRNRL EWLIQQKNKT IENVRYMEMT
501: RTQRGSK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)