AT3G12950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.967 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Trypsin family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Trypsin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003); BEST Arabidopsis thaliana protein match is: Trypsin family protein (TAIR:AT5G45030.2); Has 136 Blast hits to 136 proteins in 39 species: Archae - 0; Bacteria - 52; Metazoa - 0; Fungi - 2; Plants - 79; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:4132798..4134818 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60537.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.97 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||
| Length | 558 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPQYGSTGQH CEFTAASYFS WPTSSRLSNA AEERANYFSN LQKEEDDDDE VSPEPVSTEP KGQRATTLLE LMTIRAFHSK MLRCYSLGTA IGFRIRRGVL 101: TDIPAIIVFV SRKVHKQWLS PLQCLPTALE GAGGIWCDVD VVEFSYFGEP DHQPTPKQTF TTDIVDHLQG SDPFIGSGSQ VASQETCGTL GAIVRSQTGG 201: RQVGFVTNRH VAVNLDYPSQ KMFHPLPPAL GPGVYLGAVE RATSFITDDL WFGIFAGTNP ETFVRADGAF IPFADDYDLS RVTTSVKGGV GEIGEVKAIE 301: LQSPVGSLVG KQVVKVGRSS GLTTGTVLAY ALEYNDERGV CFLTDFLVVG ENHRSPFDLE GDSGSLIVMK GEEKARPIGI IWGGTGSRGR LKLKVGECPE 401: SWTTGVDLGR LLTHLQLDLI TTDEGLKAAV QEQRAASTTG MSSMVADSSP PYVNLKKEKR SPEEKLEASL GPLQVQHIDL EERIETKGGA PSVEHQFMPT 501: FSGQCSASAW PETAREDLVA GFTNGSCDGD LCVGLRLGDD GAKRRRTQVT NERMRPAE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)