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AT1G27340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.994
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Galactose oxidase/kelch repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT5G15710.1); Has 1110 Blast hits to 1104 proteins in 52 species: Archae - 0; Bacteria - 1; Metazoa - 2; Fungi - 0; Plants - 1106; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
BioGrid:24858eggNOG:ENOG410IIQ3eggNOG:ENOG4111JVREMBL:AC004557
EMBL:AY085471EMBL:BT025325EMBL:CP002684EnsemblPlants:AT1G27340
EnsemblPlants:AT1G27340.1entrez:839623Gene3D:2.120.10.80GeneID:839623
Genevisible:Q9FZK1GO:GO:0010305GO:GO:0010928GO:GO:0060776
Gramene:AT1G27340.1hmmpanther:PTHR32133hmmpanther:PTHR32133:SF111HOGENOM:HOG000238626
InParanoid:Q9FZK1IntAct:Q9FZK1InterPro:IPR001810InterPro:IPR011043
InterPro:IPR015915KEGG:ath:AT1G27340ncoils:CoilOMA:ARTGYNS
PaxDb:Q9FZK1Pfam:PF00646Pfam:Q9FZK1Pfscan:PS50181
PhylomeDB:Q9FZK1PRIDE:Q9FZK1PRO:PR:Q9FZK1PROSITE:PS50181
ProteinModelPortal:Q9FZK1Proteomes:UP000006548RefSeq:NP_564278.1SMART:SM00256
STRING:3702.AT1G27340.1SUPFAM:0047741SUPFAM:SSF50965SUPFAM:SSF81383
TAIR:AT1G27340UniGene:At.20471UniGene:At.22230UniProt:Q9FZK1
Coordinates (TAIR10) chr1:+:9495741..9497857
Molecular Weight (calculated) 52825.10 Da
IEP (calculated) 8.48
GRAVY (calculated) -0.18
Length 467 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEELAMLRQ LIGQLQELLH NGSPPPPSSS SSLSSSSPSF LVLHHPQYQN GWCLPCIEDT SADDCCDIVM AGGKRPGIFK MLETVKPPVK RTRKERTQGK
101: SCTEVDEISG NMDQEIWQEF PQDLFEDVVS RLPMATFFQF RAVCRKWNAL IDSDSFSRCF TELPQTIPWF YTITHENVNS GQVYDPSLKK WHHPIIPALP
201: KKSIVLPMAS AGGLVCFLDI GHRNFYVSNP LTKSFRELPA RSFKVWSRVA VGMTLNGNST SHGYKVLWVG CEGEYEVYDS LSNVWTKRGT IPSNIKLPVL
301: LNFKSQPVAI HSTLYFMLTD PEGILSYDMV SGKWKQFIIP GPPDLSDHTL AACGERLMLV GLLTKNAATC VCIWELQKMT LLWKEVDRMP NIWCLEFYGK
401: HIRMNCLGNK GCLILLSLRS RQMNRLITYN AVTREWTKVP GCTVPRGRKR LWIACGTAFH PSPTARA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)