suba logo
AT4G35180.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : LYS/HIS transporter 7
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LYS/HIS transporter 7 (LHT7); CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT1G47670.1); Has 1572 Blast hits to 1571 proteins in 189 species: Archae - 0; Bacteria - 36; Metazoa - 144; Fungi - 199; Plants - 1047; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0814eggNOG:KOG1303EMBL:AL035522EMBL:AL161586
EMBL:AY087539EMBL:BT003903EMBL:BT026137EMBL:CP002687
EnsemblPlants:AT4G35180EnsemblPlants:AT4G35180.1entrez:829671GeneID:829671
Genevisible:Q84WE9GO:GO:0003333GO:GO:0005886GO:GO:0015171
GO:GO:0016021Gramene:AT4G35180.1hmmpanther:PTHR22950hmmpanther:PTHR22950:SF299
HOGENOM:HOG000241295InParanoid:Q84WE9InterPro:IPR013057KEGG:ath:AT4G35180
OMA:WAYGNKIPaxDb:Q84WE9Pfam:PF01490Pfam:Q84WE9
PIR:T04965PRIDE:Q84WE9PRO:PR:Q84WE9ProteinModelPortal:Q84WE9
Proteomes:UP000006548RefSeq:NP_567977.2STRING:3702.AT4G35180.1TAIR:AT4G35180
tair10-symbols:LHT7TCDB:2.A.18.2.6TMHMM:TMhelixUniGene:At.31436
UniGene:At.70694UniProt:Q84WE9
Coordinates (TAIR10) chr4:-:16738517..16740385
Molecular Weight (calculated) 52297.40 Da
IEP (calculated) 9.13
GRAVY (calculated) 0.64
Length 478 amino acids
Sequence (TAIR10)
(BLAST)
001: MSIALGNLFD LESQESGGSP LFMSPAPSTD PQPISGEKNG GDGGRIPVEE WLPITESRKG NVYTATFHLL CSGIGLQVIL LPAAFAALGW VWGTIILTVG
101: FVWKLYTTWL LVQLHEAVPG IRISRYVRLA IASFGVKLGK LLGIFPVMYL SGGACTILVI TGGKSIQQLL QIMSDDNTAP LTSVQCFLVF SCIAMIMSQF
201: PNLNSLFGVS LIGAFMGIAY CTVIWILPVA SDSQRTQVSV SYATMDKSFV HIFNAIGLIA LVYRGNNLVL EIQGTLPSDS KNPSCKTMWR AVMISHALVA
301: ICMFPLTFAV YWAYGDKIPA TGGPVGNYLK LYTQEHSKRA ACFIHLTFIF SCLCSYPINL MPACDNIEMV YITKKKKPAS IIVRMMLRVF LSLVCFTIAV
401: GFPFLPYLAV LIGAIALLVT FTYPCFMWIS IKKPQRKSPM WLFNVLVGCL GASLSVLLLV ASAMRLAQKG LHANFFRP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)