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AT5G35200.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ENTH/ANTH/VHS superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ENTH/ANTH/VHS superfamily protein; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: clathrin coat assembly; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712); BEST Arabidopsis thaliana protein match is: ENTH/ANTH/VHS superfamily protein (TAIR:AT2G01600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQ90eggNOG:KOG0251EMBL:AF080121EMBL:AP002031
EMBL:AY081284EMBL:BT000375EMBL:CP002688EnsemblPlants:AT5G35200
EnsemblPlants:AT5G35200.1entrez:833474Gene3D:1.20.58.150Gene3D:1.25.40.90
GeneID:833474Genevisible:Q9LHS0GO:GO:0005545GO:GO:0005794
GO:GO:0005886GO:GO:0005905GO:GO:0006897GO:GO:0030136
GO:GO:0048268Gramene:AT5G35200.1hmmpanther:PTHR22951hmmpanther:PTHR22951:SF29
HOGENOM:HOG000238535InParanoid:Q9LHS0InterPro:IPR008942InterPro:IPR011417
InterPro:IPR013809InterPro:IPR014712iPTMnet:Q9LHS0KEGG:ath:AT5G35200
OMA:AWDFSAWPaxDb:Q9LHS0Pfam:PF07651Pfam:Q9LHS0
Pfscan:PS50942PhylomeDB:Q9LHS0PRIDE:Q9LHS0PRO:PR:Q9LHS0
PROSITE:PS50942ProteinModelPortal:Q9LHS0Proteomes:UP000006548RefSeq:NP_198370.1
SMART:SM00273SMR:Q9LHS0STRING:3702.AT5G35200.1SUPFAM:SSF48464
SUPFAM:SSF89009TAIR:AT5G35200UniGene:At.30612UniProt:Q9LHS0
Coordinates (TAIR10) chr5:-:13462463..13465581
Molecular Weight (calculated) 61182.70 Da
IEP (calculated) 6.04
GRAVY (calculated) -0.48
Length 544 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGGGGSQSS LRRYLGAIKD TTTVSLAKVN SDYKELDIAI VKATNHVERP SKERYIRAIF MAISATRPRA DVAYCIHALA RRLSRTHNWA VALKTLIVIH
101: RALREVDQTF HEEVINYSRS RSHMLNMSHF KDDSGPNAWA YSAWVRFYAL FLEERLECFR VLKYDVEVDP PRTKDLDTPD LLEQLPALQE LLFRVLDCQP
201: EGAAVQNHII QLALSMVISE STKIYQALTD GIDNLVDKFF DMQRNDAVKA LDMYRRAVKQ AGRLSEFFEV CKSVNVGRGE RFIKIEQPPT SFLQAMEEYV
301: KEAPLAAGVK KEQVVEKLTA PKEILAIEYE IPPKVVEEKP ASPEPVKAEA EKPVEKQPDL LSMDDPAPMV SELEEKNALA LAIVPVSVEQ PHSTTDFTNG
401: NSTGWELALV TAPSSNEGAA ADSKLAGGLD KLTLDSLYED AIRVSQQQNR SYNPWEQNPV HNGHMMHQPF YASNGVAAPQ PFQMANQNHQ TFGYQHQNAG
501: MMMGPVQQPY QQQQQNMNNP FGNPFVSNGN PQQPQGYNPY PRYM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)