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AT1G14040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.767
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : EXS (ERD1/XPR1/SYG1) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
EXS (ERD1/XPR1/SYG1) family protein; LOCATED IN: integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SPX, N-terminal (InterPro:IPR004331), EXS, C-terminal (InterPro:IPR004342); BEST Arabidopsis thaliana protein match is: EXS (ERD1/XPR1/SYG1) family protein (TAIR:AT2G03240.1); Has 1168 Blast hits to 1094 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 260; Fungi - 396; Plants - 362; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5409eggNOG:KOG1162EMBL:AC007576EMBL:AC068197
EMBL:AY507955EMBL:CP002684EnsemblPlants:AT1G14040EnsemblPlants:AT1G14040.1
entrez:837965GeneID:837965Genevisible:Q6R8G7GO:GO:0005794
GO:GO:0005802GO:GO:0005886GO:GO:0006817GO:GO:0016021
GO:GO:0055062GO:GO:0055069Gramene:AT1G14040.1hmmpanther:PTHR10783
hmmpanther:PTHR10783:SF43HOGENOM:HOG000241861InParanoid:Q6R8G7InterPro:IPR004331
InterPro:IPR004342iPTMnet:Q6R8G7KEGG:ath:AT1G14040OMA:VENPTGW
PaxDb:Q6R8G7Pfam:PF03105Pfam:PF03124Pfam:Q6R8G7
Pfscan:PS51380Pfscan:PS51382PhylomeDB:Q6R8G7PIR:G86273
PRIDE:Q6R8G7PRO:PR:Q6R8G7PROSITE:PS51380PROSITE:PS51382
Proteomes:UP000006548RefSeq:NP_172857.2STRING:3702.AT1G14040.1TAIR:AT1G14040
TMHMM:TMhelixUniGene:At.49302UniProt:Q6R8G7
Coordinates (TAIR10) chr1:+:4810488..4814543
Molecular Weight (calculated) 93841.70 Da
IEP (calculated) 9.76
GRAVY (calculated) -0.16
Length 813 amino acids
Sequence (TAIR10)
(BLAST)
001: MKFGKEFSSQ MVPEWQQAYM DYDFLKTLLK EIITFKRRTN NAPSHGGAKT GGGLNRKLTL YRAFSGLVST PRHKRSNSSH DVEEGVQLTG SMRSGPILVN
101: TTASHGYETT FLMAAEEGGE YELVFFRRLD DEFNKVDKFY RKKVEEVLKE AAMLNKQMDA LIAFRVKVEN PDGWRWEERT VEMTRLASDI ATSAAALSAS
201: TPAGAKSMKV RSQEHMEAIQ EGGSSRAGLM EDDEEDEDEQ NETSVVSTGA IDNETTTSRM RGARPSPIDV LGRVKINNTK ETPRSTIKGV LKVSKQTDLK
301: FSRENLMKVE ESLKRAFIEF YQKLRLLKSY SFLNVLAFSK ILKKYDKITS RDATKPYMKV VDSSYLGSSD EVMRLMERVE ATFIKHFANA NRAKAMNILR
401: PKAKRERHRI TFSTGFSAGC VFSLIVALVA IIRTRNLLEM EGQKEYMNTM FPLYSLFGFI VLHIIVYAAN IYYWRRYRVN YSFIFGFKQG TELGYRQVLL
501: VGFSIGVLAL LCVLANLDME ADPKTKAYQA RTEILPLILL AAMFIVLVLP FNYFYRSSRF FFLTCLFHCL AAPLYKVTLP DFFLGDQLTS QVQAIRSIEF
601: YICYYGWGDF RHRKSTCKES DVYNTFFFIV AVIPYVSRLL QCLRRLFEEK NPEQGYNGLK YFLTIVAVCL RTAYSIQKGQ VAWRVLAAVF SFIAAIFCTY
701: WDFVHDWGLL NRTSKNRWLR DKLLVPQKKV YFIAMVLNVL LRFAWIQTVL DFNFSFMHRQ TMVAIVASLE IIRRGIWNFF RLENEHLNNV GKYRAFKSVP
801: LPFNYDEDDD KDN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)