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AT1G56140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine-rich repeat transmembrane protein kinase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat transmembrane protein kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Malectin/receptor-like protein kinase (InterPro:IPR021720), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT1G56130.1); Has 186029 Blast hits to 134018 proteins in 4752 species: Archae - 143; Bacteria - 15786; Metazoa - 51681; Fungi - 11229; Plants - 84240; Viruses - 441; Other Eukaryotes - 22509 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G56140-MONOMEREC:2.7.11.1eggNOG:ENOG410IK0IeggNOG:ENOG410XSG4
EMBL:AC009894EMBL:AC069159EMBL:AK228283EMBL:BT011697
EMBL:BT012256EMBL:CP002684EMBL:FJ708663EnsemblPlants:AT1G56140
EnsemblPlants:AT1G56140.1entrez:842066Gene3D:2.60.120.200Gene3D:3.80.10.10
GeneID:842066Genevisible:C0LGH3GO:GO:0004674GO:GO:0005524
GO:GO:0005886GO:GO:0016021hmmpanther:PTHR27006hmmpanther:PTHR27006:SF44
HOGENOM:HOG000116550InParanoid:C0LGH3InterPro:IPR000719InterPro:IPR001245
InterPro:IPR001611InterPro:IPR008271InterPro:IPR011009InterPro:IPR013320
InterPro:IPR021720InterPro:IPR032675iPTMnet:C0LGH3KEGG:ath:AT1G56140
OMA:AEFAYPEPaxDb:C0LGH3Pfam:C0LGH3Pfam:PF07714
Pfam:PF11721Pfam:PF13855Pfscan:PS50011PhylomeDB:C0LGH3
PIR:G96602PRIDE:C0LGH3PRO:PR:C0LGH3PROSITE:PS00108
PROSITE:PS50011ProteinModelPortal:C0LGH3Proteomes:UP000006548RefSeq:NP_564709.2
scanprosite:PS00108SMART:SM00220SMR:C0LGH3STRING:3702.AT1G56140.1
SUPFAM:SSF52058SUPFAM:SSF56112TAIR:AT1G56140TMHMM:TMhelix
UniGene:At.42833UniProt:C0LGH3
Coordinates (TAIR10) chr1:-:21001708..21007725
Molecular Weight (calculated) 113761.00 Da
IEP (calculated) 6.78
GRAVY (calculated) -0.12
Length 1033 amino acids
Sequence (TAIR10)
(BLAST)
0001: MLRLWRYLCL LLTVWFLCNF GPVYVVRAQN RTGATTHPDE ALALNSIFAA WRIRAPREWN ISGELCSGAA IDASVLDSNP AYNPLIKCDC SFENSTICRI
0101: TNIKVYAMEV VGSIPQQLWT LEYLTNLNLG QNVLTGSLPP ALGNLTRMRW MTFGINALSG PIPKEIGLLT DLRLLSISSN NFSGSIPDEI GRCTKLQQIY
0201: IDSSGLSGGL PVSFANLVEL EQAWIADMEL TGQIPDFIGD WTKLTTLRIL GTGLSGPIPA SFSNLTSLTE LRLGDISNGN SSLEFIKDMK SLSILVLRNN
0301: NLTGTIPSNI GEYSSLRQLD LSFNKLHGTI PASLFNLRQL THLFLGNNTL NGSLPTQKGQ SLSNVDVSYN DLSGSLPSWV SLPNLNLNLV ANNFTLEGLD
0401: NRVLSGLNCL QKNFPCNRGK GIYSDFSINC GGPEIRSVTE AVFEREDEDL GPASFVVSAG QRWAASSVGL FAGSSNNIYI STSQSQFVNT LDSELFQSAR
0501: LSASSLRYYG LGLENGGYTV TLQFAEIQIL GSTSNTWRGL GRRRFDIYVQ GRLVEKDFDV RRTAGDSTVR AVQREYKANV SQNHLEIHLF WAGKGTCCIP
0601: IQGAYGPLIS AVGATPDFTP TVGNRPPSKG KSMTGTIVGV IVGVGLLSII SGVVIFIIRK RRKRYTDDEE ILSMDVKPYT FTYSELKSAT QDFDPSNKLG
0701: EGGFGPVYKG KLNDGREVAV KLLSVGSRQG KGQFVAEIVA ISAVQHRNLV KLYGCCYEGE HRLLVYEYLP NGSLDQALFG EKTLHLDWST RYEICLGVAR
0801: GLVYLHEEAR LRIVHRDVKA SNILLDSKLV PKVSDFGLAK LYDDKKTHIS TRVAGTIGYL APEYAMRGHL TEKTDVYAFG VVALELVSGR PNSDENLEDE
0901: KRYLLEWAWN LHEKGREVEL IDHQLTEFNM EEGKRMIGIA LLCTQTSHAL RPPMSRVVAM LSGDVEVSDV TSKPGYLTDW RFDDTTASSI SGFPLRNTQA
1001: SESFTSFVAP RSEISPRNND ARPMLGAQMN EGR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)