AT1G56140.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Leucine-rich repeat transmembrane protein kinase | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Leucine-rich repeat transmembrane protein kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Malectin/receptor-like protein kinase (InterPro:IPR021720), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT1G56130.1); Has 186029 Blast hits to 134018 proteins in 4752 species: Archae - 143; Bacteria - 15786; Metazoa - 51681; Fungi - 11229; Plants - 84240; Viruses - 441; Other Eukaryotes - 22509 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:21001708..21007725 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 113761.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.78 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 1033 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
0001: MLRLWRYLCL LLTVWFLCNF GPVYVVRAQN RTGATTHPDE ALALNSIFAA WRIRAPREWN ISGELCSGAA IDASVLDSNP AYNPLIKCDC SFENSTICRI 0101: TNIKVYAMEV VGSIPQQLWT LEYLTNLNLG QNVLTGSLPP ALGNLTRMRW MTFGINALSG PIPKEIGLLT DLRLLSISSN NFSGSIPDEI GRCTKLQQIY 0201: IDSSGLSGGL PVSFANLVEL EQAWIADMEL TGQIPDFIGD WTKLTTLRIL GTGLSGPIPA SFSNLTSLTE LRLGDISNGN SSLEFIKDMK SLSILVLRNN 0301: NLTGTIPSNI GEYSSLRQLD LSFNKLHGTI PASLFNLRQL THLFLGNNTL NGSLPTQKGQ SLSNVDVSYN DLSGSLPSWV SLPNLNLNLV ANNFTLEGLD 0401: NRVLSGLNCL QKNFPCNRGK GIYSDFSINC GGPEIRSVTE AVFEREDEDL GPASFVVSAG QRWAASSVGL FAGSSNNIYI STSQSQFVNT LDSELFQSAR 0501: LSASSLRYYG LGLENGGYTV TLQFAEIQIL GSTSNTWRGL GRRRFDIYVQ GRLVEKDFDV RRTAGDSTVR AVQREYKANV SQNHLEIHLF WAGKGTCCIP 0601: IQGAYGPLIS AVGATPDFTP TVGNRPPSKG KSMTGTIVGV IVGVGLLSII SGVVIFIIRK RRKRYTDDEE ILSMDVKPYT FTYSELKSAT QDFDPSNKLG 0701: EGGFGPVYKG KLNDGREVAV KLLSVGSRQG KGQFVAEIVA ISAVQHRNLV KLYGCCYEGE HRLLVYEYLP NGSLDQALFG EKTLHLDWST RYEICLGVAR 0801: GLVYLHEEAR LRIVHRDVKA SNILLDSKLV PKVSDFGLAK LYDDKKTHIS TRVAGTIGYL APEYAMRGHL TEKTDVYAFG VVALELVSGR PNSDENLEDE 0901: KRYLLEWAWN LHEKGREVEL IDHQLTEFNM EEGKRMIGIA LLCTQTSHAL RPPMSRVVAM LSGDVEVSDV TSKPGYLTDW RFDDTTASSI SGFPLRNTQA 1001: SESFTSFVAP RSEISPRNND ARPMLGAQMN EGR |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)