AT5G45840.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.968 What is SUBAcon? |
|
||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||
| Description (TAIR10) | protein_coding : Leucine-rich repeat protein kinase family protein | ||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||
| Computational Description (TAIR10) |
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT4G18640.1); Has 72134 Blast hits to 33602 proteins in 773 species: Archae - 8; Bacteria - 571; Metazoa - 4648; Fungi - 244; Plants - 63020; Viruses - 48; Other Eukaryotes - 3595 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
|
||||||||||||
| Coordinates (TAIR10) | chr5:-:18594080..18597221 | ||||||||||||
| Molecular Weight (calculated) | 75349.50 Da | ||||||||||||
| IEP (calculated) | 6.13 | ||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||
| Length | 668 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGCRWNPIGF QFSCFMFLII TLQSRSSLSL ESEGFVLLKF RARVDSDPHG TLANWNVSDH DHFCSWFGVT CVDNKVQMLN LSGCSLGGTL APELSQLSEL 101: RSLILSKNKL SGDIPNEFAS FAKLEFLDLR DNNLNGVVPP ELNKVLTPEN LLLSGNKFAG FMTVKFLRLQ SLYKVQMNKN RELSSVSADV LDCVNRKLGY 201: WVRRESHGKN YVVNYHPSEN ETSIFKRREL LEETSNLAAM PAPDTPSPSP EIITIVFPRS SGSFPALTNA KKRIPPLIPP SSPPPLPTNN TIASDPPRKF 301: EEKSKGFKDV WLYVVIGVAA FVAMLIIVAV IFFFRKRAVK SIGPWKTGLS GQLQKAFVTG VPKLNRSELE TACEDFSNII EAFDGYTVYK GTLSSGVEIA 401: VASTAILETR EWTRAMEMTY RRRIDTMSRV NHKNFINLIG YCEEDEPFNR MMVFEYAPNG TLFEHLHDKE MEHLDWNART RIIMGTAYCL QYMHELNPPI 501: SHTKLVSSAI YLTDDYAAKV GEVPFSGQTG SKPRKPMSGD LDQSLLPLPP EPETNVYSFG VLMLEIISGK LSDSEEEGSI LKWASKYLEN DNLRDMIDPT 601: LTTYKEEELE AICDVARHCL KLDESQRPKM KYVVQQLKEV INISQEQATP RLSPLWWAEL EILSSEAT |
||||||||||||
| See Also |
|
||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)