AT5G55060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.973 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58510.1); Has 223 Blast hits to 218 proteins in 80 species: Archae - 0; Bacteria - 2; Metazoa - 117; Fungi - 6; Plants - 65; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:22342079..22346400 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73879.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.94 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||
| Length | 662 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: METAPPSLVS KARTAFNSAA AKAERVFTDL KSDREEEKQS TRNVNDSQEE NEVKTQGWRT AHIRKKQEWQ NKLKNLRIGR KEVEDQDKVE DSAMAAPFYD 101: ENFYILKAKQ EQEAKASDVG CMVESLNAVD ANSIPLASVV KQLAVAIEAG KRAKNVKDFV ASSGSSSPVR ERGGLSLSAV KSLVLGEKED KLGFDSGDED 201: KLVSLINALF NVDSGFLSRK IVSDLESPTN RSSFAKDLHA APPSSFVVKL AEVIGSFTTP RRMALFWCRV VEELRRFWNE EKHIPWIPLD NNPDLKSCLL 301: HQWLQVINCC LARKARNVAA SEALDAVMRQ ASSANEKSDV SESMGSLLYA KSNSGELILR LGVYNQVENL TMLETGEPVY SPITQEGPLL TEDLIRETEE 401: LVLRTGSMGA GCSQLLSDMQ AFKAANPGCI LEDFVRWHSP PDWTENGNMS GDDSSPVRGQ LSTRMQKEGN LWRELWETAK PLPAVKQAPL FDEDLAVEGI 501: LNYLEDIPAA ELFEQLFTSL VSLGFVMVEP VLATNDDLSK LFFECKDYVV AICQGGAWTD KLDDLCQVYE TVETMLLRPE EVLRSMKQTE ESPSSGSETK 601: RRFKRLGFIF RGSKERKQTR VPSETEQKST EPSPRQSFSS LFDGKSSLFS KRPPRPENVT LV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)