AT3G58600.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Adaptin ear-binding coat-associated protein 1 NECAP-1 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Adaptin ear-binding coat-associated protein 1 NECAP-1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: endocytosis; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adaptin ear-binding coat-associated protein 1 NECAP-1 (InterPro:IPR012466); BEST Arabidopsis thaliana protein match is: non-intrinsic ABC protein 4 (TAIR:AT1G03900.1); Has 463 Blast hits to 463 proteins in 142 species: Archae - 0; Bacteria - 2; Metazoa - 232; Fungi - 69; Plants - 94; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:21668746..21670999 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33919.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.48 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.80 | ||||||||||||||||||||||||||||||||
| Length | 302 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDQASSSSTM EEDKKSSTDP VNVDDNEERE AIEIALFQVP ECYVYLIPPR KTAASYRADE WDVNKWAWEG ALKVVSKGEE CIIKLVDKTT GELYAQAFLR 101: EGELHPVEAV IDSSRYFVLR VEEKIDGRVR HAFIGLGFRE RTEAYDFQAA LHDHMKYLNK KKTAEEMEQH YQNTSSVDYS LKEGETIVLQ LKNRSDKDSK 201: SKTVEKSLGN LSLEDKGKSI ETTIPSIILP PPPPGPLSPV TTAQKSPSSL PPSLSLQRSS EQQDLDTKRE EEEEEKKEDL KAKDGGVEDA PDDDFGDFQA 301: AG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)